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2019-09-06gn: Upstream some crates.Efraim Flashner
2019-09-06Add link to sourcesPjotr Prins
2019-09-06Added old pil packagePjotr Prins
2019-09-06Cleaning up genenetwork2 build.Pjotr Prins
Remove pylmm and r-phewas. Added rust-qtlreaper Fixed python-setuptools warning
2019-09-05gn: Update some cratesEfraim Flashner
2019-09-05Fix genenetwork2Pjotr Prins
2019-09-05Using trunk qvaluePjotr Prins
2019-09-05Disable small files and rpy2 tests (one fails)Pjotr Prins
2019-09-05ReaperPjotr Prins
2019-09-05Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticsPjotr Prins
2019-09-03gn: Sparql-query upstreamed.Efraim Flashner
* gn/packages/sparql-query.scm: Remove file.
2019-09-03gn: Adjust to upstream crate changes.Efraim Flashner
* gn/packages/crates-io.scm (rust-syn, rust-synstructure, rust-synstructure-0.10)[arguments]: Use rust-unicode-xid-0.1 in cargo-inputs. (rust-constant-time-eq): Remove variable.
2019-09-03gn: Add ngmlr, svim.Efraim Flashner
* gn/packages/bioinformatics.scm (ngmlr, svim): New variables.
2019-09-02gn: Add sniffles.Efraim Flashner
* gn/packages/bioinformatics.scm (sniffles): New variable.
2019-09-02gn: Upstream some cratesEfraim Flashner
2019-09-02gn: minor crate changesEfraim Flashner
2019-08-29gn: Add more cratesEfraim Flashner
2019-08-29gn: Remove upstreamed cratesEfraim Flashner
2019-08-28gn: Remove upstreamed cratesEfraim Flashner
2019-08-28gn: Update some cratesEfraim Flashner
2019-08-28gn: bioinformatics.scm: Clean up module imports.Efraim Flashner
2019-08-28gn: Remove some upstreamed packagesEfraim Flashner
2019-08-28gn: genenetwork.scm: Clean up module imports.Efraim Flashner
2019-08-28gn: r-ctl: Update to 1.0.0-2.Efraim Flashner
* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-2.
2019-08-28gn: genenetwork.scm: Fix indentation.Efraim Flashner
2019-08-26gn: Updates to cratesEfraim Flashner
2019-08-26gn: rust-qtlreaper: Update to 0.1.4.Efraim Flashner
* gn/packages/genenetwork.scm (rust-qtlreaper): Update to 0.1.4. [arguments]: Add rust-ndarray to cargo-inputs. * gn/packages/crates-io.scm: Add many new crates.
2019-08-25gn: remove some upstreamed cratesEfraim Flashner
2019-08-23gn: Update some cratesEfraim Flashner
2019-08-21gn: edirect-gn: Fix typoEfraim Flashner
* gn/packages/bioinformatics.scm (edirect-gn)[supported-systems]: Replace atom with list.
2019-08-21gn: edirect-gn: Add native-search-path.Efraim Flashner
* gn/packages/bioinformatics.scm (edirect-gn)[native-search-paths]: New field.
2019-08-21gn: edirect-gn: Install missing binary.Efraim Flashner
* gn/packages/bioinformatics.scm (edirect-gn)[arguments]: Install missing 'efetch' binary. Sort installed files alphabetically. Substitute call to 'exec perl' for all potentially affected files.
2019-08-20gn: Add custom edirect packageEfraim Flashner
2019-08-15gn: hyphy: Update to 2.5.0.Efraim Flashner
* gn/packages/hyphy.scm (hyphy): Update to 2.5.0. [source]: Download using 'git-fetch'. [inputs]: Add curl, openssl. [arguments]: Add test-target.
2019-08-13gn: Clean up some cratesEfraim Flashner
2019-08-1242 crates upstreamedEfraim Flashner
2019-08-12gn: mongodb upstreamedEfraim Flashner
2019-08-12gn: add missing module importsEfraim Flashner
2019-08-09gn: openfbya: Clean up package.Efraim Flashner
* gn/packages/openfyba.scm (openfyba)[source]: Don't use unstable tarball. [arguments]: Use 'boostrap phase to replace 'boostrap phase. Adjust for change in source.
2019-08-09gn: 4store upstreamedEfraim Flashner
2019-08-06gn: clFFT: Update to 2.12.2.Efraim Flashner
* gn/packages/arrayfire.scm (clFFT): Update to 2.12.2.
2019-08-06gn: Fix building arrayfire.Efraim Flashner
2019-08-05gn: varscan: Fix build.Efraim Flashner
* gn/packages/bioinformatics.scm (varscan)[arguments]: Disable tests. Update all custom phases. [home-page]: Use https. [description]: Add it.
2019-08-05gn: remove some upstream packagesEfraim Flashner
2019-08-05gn: Remove some duplicate packagesEfraim Flashner
2019-08-05gn: contra: Remove bundled source.Efraim Flashner
* gn/packages/bioinformatics.scm (contra)[source]: Add snippet to remove bundled sources.
2019-08-05gn: contra: Update package definition.Efraim Flashner
* gn/packages/bioinformatics.scm (contra)[arguments]: Update custom 'install phase.
2019-08-05gn: contra: Update source uri.Efraim Flashner
* gn/packages/bioinformatics.scm (contra)[source]: Update to new folder structure.
2019-08-05gn: pindel: Update package definition.Efraim Flashner
* gn/packages/bioinformatics.scm (pindel)[arguments]: Use 'invoke' when possible. Parameterize custom 'check phase.
2019-08-05gn: pindel: Don't use unstable tarball.Efraim Flashner
* gn/packages/bioinformatics.scm (pindel)[source]: Download using 'git-fetch'.
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