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-rw-r--r--packages/cwl.scm131
1 files changed, 131 insertions, 0 deletions
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+;; Experimental packaging for the Common Workflow Language (started by Bruno)
+
+(define-module (cwl)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages python)
+ #:use-module (guix download)
+ #:use-module (guix packages)
+ #:use-module (guix git-download)
+ #:use-module (guix utils)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system trivial)
+ #:use-module (srfi srfi-1))
+
+(define-public python-cwltool
+ (package
+ (name "python-cwltool")
+ (version "1.0.20150916041152")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/c/cwltool/cwltool-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-setuptools" ,python-setuptools)))
+ (home-page
+ "https://github.com/common-workflow-language/common-workflow-language")
+ (synopsis
+ "Common workflow language reference implementation")
+ (description
+ "Common workflow language reference implementation")
+ (license asl2.0)))
+
+(define-public python-rdflib-jsonld
+ (package
+ (name "python-rdflib-jsonld")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/r/rdflib-jsonld/rdflib-jsonld-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "121a876k49xl85jvikyh4hzvm34456ikw66cra5dfyr15br1qjll"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-setuptools" ,python-setuptools)))
+ (home-page
+ "https://github.com/RDFLib/rdflib-jsonld")
+ (synopsis
+ "rdflib extension adding JSON-LD parser and serializer")
+ (description
+ "rdflib extension adding JSON-LD parser and serializer")
+ (license bsd-3)))
+
+(define-public python-schema-salad
+ (package
+ (name "python-schema-salad")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/s/schema-salad/schema-salad-"
+ version
+ ".tar.gz"))
+ (sha256
+ (base32
+ "09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37"))))
+ (build-system python-build-system)
+ (arguments `(#:tests? #f)) ;; No tests.
+ (inputs
+ `(("python-cython" ,python-cython)
+ ("python-setuptools" ,python-setuptools)
+ ("python-rdflib-jsonld" ,python-rdflib-jsonld)
+ ("python-rdflib" ,python-rdflib)
+ ("python-mistune" ,python-mistune)))
+ (propagated-inputs
+ `(("python-rdflib" ,python-rdflib)))
+ (native-inputs
+ `(("python-rdflib" ,python-rdflib)))
+ (home-page
+ "https://github.com/common-workflow-language/common-workflow-language")
+ (synopsis
+ "Schema Annotations for Linked Avro Data (SALAD)")
+ (description
+ "Schema Annotations for Linked Avro Data (SALAD)")
+ (license asl2.0)))
+
+(define-public python-rdflib
+ (package
+ (name "python-rdflib")
+ (version "4.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://pypi.python.org/packages/source/r/rdflib/rdflib-"
+ version
+ ".tar.gz"))
+ (patches
+ ;; The patch has no effect under Python 3.
+ (list (search-patch "python2-rdflib-drop-sparqlwrapper.patch")))
+ (sha256
+ (base32
+ "1h3f8yl9frjz8rsykjdjk83qsrcvld3qa7pkzh69s91h97ydl83l"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-html5lib" ,python-html5lib)
+ ("python-isodate" ,python-isodate)
+ ("python-pyparsing" ,python-pyparsing)
+ ("python-setuptools" ,python-setuptools)))
+ (home-page "https://github.com/RDFLib/rdflib")
+ (synopsis
+ "Python RDF library")
+ (description
+ "RDFLib is a Python library for working with RDF, a simple yet
+powerful language for representing information.")
+ (license (non-copyleft "file://LICENSE"
+ "See LICENSE in the distribution."))))
+