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-rw-r--r--gn/packages/genecup.scm8
1 files changed, 8 insertions, 0 deletions
diff --git a/gn/packages/genecup.scm b/gn/packages/genecup.scm
index 844e10c..d0689e6 100644
--- a/gn/packages/genecup.scm
+++ b/gn/packages/genecup.scm
@@ -7,7 +7,9 @@
#:use-module (guix git-download)
#:use-module (guix build-system python)
#:use-module (gnu packages admin)
+ #:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
+ #:use-module (gnu packages compression)
#:use-module (gnu packages javascript)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages python)
@@ -179,6 +181,10 @@ if __name__ == '__main__':
(("https.*1.12.9/umd/popper.min.js.*\\\">") "/static/popper.min.js\">"))
(substitute* "ratspub.py"
(("hostname") (string-append inetutils "/bin/hostname"))))))
+ (add-after 'unpack 'extract-pubmed-archive
+ (lambda _
+ (invoke "gzip" "-d" "minipubmed.tgz")
+ (invoke "tar" "xvf" "minipubmed.tar")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
@@ -230,6 +236,8 @@ if __name__ == '__main__':
(inputs
`(("edirect" ,edirect)
("inetutils" ,inetutils)
+ ("gzip" ,gzip)
+ ("tar" ,tar)
("python-bcrypt" ,python-bcrypt)
("python-flask-sqlalchemy" ,python-flask-sqlalchemy)
("python-keras" ,python-keras-no-tests)