diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 96 |
1 files changed, 37 insertions, 59 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 2fbeff3..9401374 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -452,65 +452,43 @@ implemented, light on server resource usage, and fairly speedy.") (name "python3-genenetwork2") (version (string-append "3.11-guix-" (string-take commit 7) )) (propagated-inputs - `(,@(fold alist-delete (package-propagated-inputs genenetwork2) - '("python-2" - "python2-coverage" - "python2-flask" - "python2-gunicorn-gn" - "python2-cssselect" - "python2-elasticsearch" - "python2-htmlgen-gn" - "python2-jinja2" - "python2-sqlalchemy" - "python2-flask-sqlalchemy" - "python2-setuptools" - "python2-scipy" - "python2-lxml" - "python2-mechanize" - "python2-mock" - "python2-mysqlclient" - "python2-nose" - "python2-numarray" - "python2-numpy" - "python2-pandas" - "python2-parallel" - "python2-parameterized" - "python2-passlib" - "python2-redis" - "python2-requests" - "python2-simplejson" - "python2-pyyaml" - "python-unittest2" - "python2-xlsxwriter" - "python2-qtlreaper")) - ("python-pillow" ,python-pillow) - ("python-coverage" ,python-coverage) - ("python-flask" ,python-flask) - ("gunicorn" ,gunicorn) - ("python-cssselect" ,python-cssselect) - ("python-elasticsearch" ,python-elasticsearch) - ("python-htmlgen" ,python-htmlgen) - ("python-jinja2" ,python-jinja2) - ("python-sqlalchemy" ,python-sqlalchemy) - ("python-flask-sqlalchemy" ,python-flask-sqlalchemy) - ("python-setuptools" ,python-setuptools) - ("python-scipy" ,python-scipy) - ("python-lxml" ,python-lxml) - ("python-mechanize" ,python-mechanize) - ("python-mysqlclient" ,python-mysqlclient) - ("python-numpy" ,python-numpy) - ("python-pandas" ,python-pandas) - ("python-mock" ,python-mock) - ("python-parameterized" ,python-parameterized) - ("python-passlib" ,python-passlib) - ("python-redis" ,python-redis) - ("python-requests" ,python-requests) - ("python-simplejson" ,python-simplejson) - ("python-pyyaml" ,python-pyyaml) - ("python-unittest2" ,python-unittest2) - ("python-xlsxwriter" ,python-xlsxwriter))) + (let ((inputs (package-propagated-inputs genenetwork2))) + `(,@(fold + alist-delete inputs + (map car + (filter (lambda (x) + (let ((name (car x))) + (or (string-prefix? "python2" name) + (string-prefix? "python-2" name)))) + inputs))) + ("python-pillow" ,python-pillow) + ("python-coverage" ,python-coverage) + ("python-flask" ,python-flask) + ("gunicorn" ,gunicorn) + ("python-cssselect" ,python-cssselect) + ("python-elasticsearch" ,python-elasticsearch) + ("python-htmlgen" ,python-htmlgen) + ("python-jinja2" ,python-jinja2) + ("python-sqlalchemy" ,python-sqlalchemy) + ("python-flask-sqlalchemy" ,python-flask-sqlalchemy) + ("python-setuptools" ,python-setuptools) + ("python-scipy" ,python-scipy) + ("python-lxml" ,python-lxml) + ("python-mechanize" ,python-mechanize) + ("python-mysqlclient" ,python-mysqlclient) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-mock" ,python-mock) + ("python-parameterized" ,python-parameterized) + ("python-passlib" ,python-passlib) + ("python-redis" ,python-redis) + ("python-requests" ,python-requests) + ("python-simplejson" ,python-simplejson) + ("python-pyyaml" ,python-pyyaml) + ("python-unittest2" ,python-unittest2) + ("python-xlsxwriter" ,python-xlsxwriter)))) (arguments - `(#:python ,python-3 + `(#:python ,python #:phases (modify-phases %standard-phases (delete 'reset-gzip-timestamps) @@ -518,7 +496,7 @@ implemented, light on server resource usage, and fairly speedy.") (lambda _ (substitute* "bin/genenetwork2" (("/usr/bin/env") (which "env")) - (("python ") (string-append (which "python") " ")) + (("python ") (string-append (which "python3") " ")) (("readlink") (which "readlink")) (("dirname") (which "dirname")) (("basename") (which "basename")) |