diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/crates-io.scm | 74 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 32 |
2 files changed, 105 insertions, 1 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 775a5e9..134298e 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -5,10 +5,82 @@ #:use-module (guix download) #:use-module (guix utils) #:use-module (guix build-system cargo) - #:use-module (gnu packages crates-io)) + #:use-module (gnu packages crates-io) + #:use-module (gnu packages rust)) ;; Please keep these packages sorted alphabetically +(define-public rust-bytemuck-1.3 + (package + (inherit rust-bytemuck-1) + (name "rust-bytemuck") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "bytemuck" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1scaac5xbfynzbpvz9yjbmg9ag2jalxfijapwlqh7xldf4li0ynv")))))) + +(define-public rust-handlegraph-0.3 + (package + (name "rust-handlegraph") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "handlegraph" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1sj100w4lpj7798pws85qrfrzsily5hhzh6j118rwf56sgic1yml")))) + (build-system cargo-build-system) + (arguments + `(#:rust ,rust-1.42 + #:cargo-inputs + (("rust-bstr" ,rust-bstr-0.2) + ("rust-gfa" ,rust-gfa-0.6)))) + (home-page "https://github.com/chfi/rs-handlegraph") + (synopsis "Library for use in variation graphs") + (description + "This package provides a Rust implementation of VG handle graph.") + (license license:expat))) + +(define-public rust-gfa-0.6 + (package + (name "rust-gfa") + (version "0.6.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "gfa" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0ghmy4r0324s6vvmj9nmh326346nkwm7nybnpcpswnjvf02b85gw")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bstr" ,rust-bstr-0.2) + ("rust-bytemuck" ,rust-bytemuck-1.3) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-nom" ,rust-nom-5) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3)))) + (home-page "https://github.com/chfi/rs-gfa") + (synopsis "Library for graphs in the GFA (Graphical Fragment Assembly) format") + (description + "This package provides a library for working with graphs in the +@acronym{GFA, Graphical Fragment Assembly} format.") + (license license:expat))) + (define-public rust-ndarray-0.12 (package (name "rust-ndarray") diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index a621124..e6289b9 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -25,6 +25,7 @@ #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) + #:use-module (gnu packages rust) #:use-module (gnu packages statistics) #:use-module (gnu packages version-control) #:use-module (gnu packages vim) @@ -282,6 +283,37 @@ implemented, light on server resource usage, and fairly speedy.") (description "Reimplementation of genenetwork/QTLReaper in Rust") (license #f)))) +(define-public gfautil + (package + (name "gfautil") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "gfautil" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0cgiis9v1nd4m7zxvgsz8jf8ijv4d8fa5wb7cpnjshksb8z7xh69")))) + (build-system cargo-build-system) + (arguments + `(#:rust ,rust-1.42 + #:cargo-inputs + (("rust-bstr" ,rust-bstr-0.2) + ("rust-clap" ,rust-clap-2) + ("rust-gfa" ,rust-gfa-0.6) + ("rust-handlegraph" ,rust-handlegraph-0.3) + ("rust-rayon" ,rust-rayon-1) + ("rust-serde" ,rust-serde-1) + ("rust-structopt" ,rust-structopt-0.3)))) + (home-page "https://github.com/chfi/rs-gfa-utils") + (synopsis "Command line tools for working with GFA files") + (description + "This package provides command line tools for working with @acronym{GFA, +Graphical Fragment Assembly} files and related formats.") + (license license:expat))) + (define-public genenetwork2 (let ((commit "1538ffd33af19e6ac922b4ee85fe701408968dfd")) (package |