diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/gemma.scm | 29 |
1 files changed, 14 insertions, 15 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 1c95310..803d592 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -62,18 +62,19 @@ #:use-module (srfi srfi-1)) (define-public openblas-haswell + (let ((commit "893bd14e924fa72a4ed345a75d64c637f1b1c550")) (package (name "openblas-haswell") - (version "0.2.20") - (source - (origin - (method url-fetch) - (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v" - version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "1bd03c5xni0bla0wg1wba841b36b0sg13sjja955kn5xzvy4i61a")))) + (version (string-append "0.2.20-git-" (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xianyi/OpenBLAS.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0qv03c2yq46p9sajc3a3f56ijfifyv6f4n51a81wc2hihy4ilcap")))) (build-system gnu-build-system) (arguments @@ -98,7 +99,6 @@ "NO_WARMUP=0" "GEMM_MULTITHREAD_THRESHOLD=4" "USE_THREAD=1" - "USE_THREAD=1" "NO_AFFINITY=0" "NO_LAPACK=0" ; use OpenBlas LAPACK "COMMON_PROF=0" ; disable profiling @@ -136,7 +136,7 @@ (synopsis "Platform optimized BLAS library based on GotoBLAS") (description "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.") - (license license:bsd-3))) + (license license:bsd-3)))) (define-public gsl1 ; supporting older GSL tests @@ -183,7 +183,7 @@ numbers.") ("eigen" ,eigen) ("shunit2" ,shunit2) ; ("lapack" ,lapack) - included in openblas-haswell - ("openblas-haswell" ,openblas-haswell) + ("openblas" ,openblas-haswell) ("zlib" ,zlib) )) (native-inputs ; for running tests @@ -198,7 +198,6 @@ numbers.") (string-append "EIGEN_INCLUDE_PATH=" (assoc-ref %build-inputs "eigen") "/include/eigen3/") - "fast-check" ) #:phases ; "/include/eigen3/" @@ -212,7 +211,7 @@ numbers.") (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (install-file "bin/gemma" (string-append out "/bin")))))) - #:tests? #f + ; #:tests? #f #:parallel-tests? #f)) (home-page "http://www.xzlab.org/software.html") (synopsis "Tool for genome-wide efficient mixed model association") |