diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/book_evolutionary_genomics.scm | 18 | ||||
| -rw-r--r-- | gn/packages/python.scm | 32 |
2 files changed, 44 insertions, 6 deletions
diff --git a/gn/packages/book_evolutionary_genomics.scm b/gn/packages/book_evolutionary_genomics.scm index dca4350..e3bb84a 100644 --- a/gn/packages/book_evolutionary_genomics.scm +++ b/gn/packages/book_evolutionary_genomics.scm @@ -33,7 +33,7 @@ #:use-module (gn packages bioinformatics) #:use-module (gn packages javascript) - ; #:use-module (gn packages python) + #:use-module (gn packages python) ; #:use-module (gn packages statistics) #:use-module (srfi srfi-1)) @@ -90,10 +90,7 @@ (base32 "1dncwiyhy1s1pimb6f2dzs3ivahah5id3chw4r10j92754bxmrn2")))) (propagated-inputs - `( - ; ("python" ,python) - ("r" ,r) - )) + `(("r" ,r))) (inputs `(("zlib" ,zlib) ("openssl" ,openssl))) @@ -101,7 +98,14 @@ (home-page "https://github.com/s-u/Rserve") (synopsis "Fast, flexible and powerful server providing access to R from many languages and systems http://RForge.net/Rserve") (description - ".") + "Rserve acts as a socket server (TCP/IP or local sockets) which +allows binary requests to be sent to R. Every connection has a +separate workspace and working directory. Client-side implementations +are available for popular languages such as C/C++ and Java, allowing +any application to use facilities of R without the need of linking to +R code. Rserve supports remote connection, user authentication and +file transfer. A simple R client is included in this package as +well.") (license license:gpl2))) (define-public book-evolutionary-genomics @@ -121,6 +125,8 @@ ("source" ,source))) (propagated-inputs `(("python" ,python) + ("python-biopython" ,python-biopython) + ("python-rserve" ,python-rserve) ("r" ,r) ("r-gener" ,r-gener) ("r-biostrings" ,r-biostrings) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index a045724..9bdb1ca 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -148,6 +148,38 @@ powerful language for representing information.") `(#:python ,python-2 #:tests? #f))))) ; 3 tests fail, also outside Guix +(define-public python-rserve + (package + (name "python-rserve") + (version "0.91") + (source + (origin + (method url-fetch) + ; https://pypi.python.org/packages/27/e8/b23e0e3d38dadc721947bc9f4b6f1b3e5e1e6c26ac67d8ad88376c5555a0/pyRserve-0.9.1.tar.gz#md5=6da1978f908dd7bdc2d22ee5c29238c0 + (uri (string-append + "https://pypi.python.org/packages/27/e8/b23e0e3d38dadc721947bc9f4b6f1b3e5e1e6c26ac67d8ad88376c5555a0/pyRserve-0.9.1.tar.gz")) + (sha256 + (base32 + "162dg7d0ni035b75qskrjdzd1yyxwnvybcv115aiapcvyfw2vbsm")))) + (build-system python-build-system) + (propagated-inputs + `( + ("python-numpy" ,python-numpy) + )) + (inputs + `(("python-setuptools" ,python-setuptools) + ("python-pytest" ,python-pytest) + )) + (home-page "https://pypi.python.org/pypi/pyRserve") + (synopsis + "RServe.") + (description + ".") + (license license:expat))) + +(define-public python2-rserve + (package-with-python2 python-rserve)) + (define-public python-avro ; guix ready - used by CWL (package (name "python-avro") |