diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 44 |
1 files changed, 3 insertions, 41 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 5f18c69..501b300 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -114,10 +114,10 @@ (license license:agpl3+)))) (define-public python2-qtlreaper - (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) + (let ((commit "442c217b90393380a8634ff8636b44992f5c53dd")) (package (name "python2-qtlreaper") - (version (string-append "1.1-gn2-" (string-take commit 7) )) + (version (string-append "1.11-gn2-" (string-take commit 7) )) (source (origin (method git-fetch) (uri (git-reference @@ -127,7 +127,7 @@ (file-name (string-append name "-" (string-take commit 7))) (sha256 (base32 - "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja")))) + "1rrbm1ap2zzyjxmrs9aa1d18sgiba5dhj1fmkl7wmab06jv3j1hm")))) (build-system python-build-system) (arguments `(#:python ,python-2 @@ -181,44 +181,6 @@ bootstrap resampling to estimate the confidence region for the location of a putative QTL.") (license license:gpl2+)))) -(define-public python-qtlreaper - (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) - (package - (name "python-qtlreaper") - (version (string-append "1.1-gn2-" (string-take commit 7) )) - (source (origin - (method git-fetch) - (uri (git-reference - ;; (url "https://github.com/genenetwork/genenetwork2.git") - (url "https://github.com/pjotrp/QTLreaper.git") - (commit commit))) - (file-name (string-append name "-" (string-take commit 7))) - (sha256 - (base32 - "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja")))) - (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after - 'unpack 'fix-tests - (lambda* (#:key inputs #:allow-other-keys) - (substitute* '("./test/example1.py" "./test/example2.py") - (("/usr/bin/python") (which "python3")))))) - #:tests? #f)) ; no 'setup.py test' really! - (home-page "http://qtlreaper.sourceforge.net/") - (synopsis "Scan expression data for QTLs") - (description - "Batch-oriented version of WebQTL. It requires, as input, -expression data from members of a set of recombinant inbred lines and -genotype information for the same lines. It searches for an -association between each expression trait and all genotypes and -evaluates that association by a permutation test. For the permutation -test, it performs only as many permutations as are necessary to define -the empirical P-value to a reasonable precision. It also performs -bootstrap resampling to estimate the confidence region for the -location of a putative QTL.") - (license license:gpl2+)))) (define-public rust-qtlreaper (let ((commit "2e7fed6d45b0b602d80fa2a55835f96ef1cba9e3") |