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-rw-r--r--gn/packages/bioinformatics.scm5
-rw-r--r--gn/packages/python.scm59
2 files changed, 64 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 35ff166..2a6aacc 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -236,15 +236,20 @@ confidence region for the location of a putative QTL.")
("python2-htmlgen-gn" ,python2-htmlgen-gn)
("python2-jinja2" ,python2-jinja2)
("python2-sqlalchemy" ,python2-sqlalchemy)
+ ("python2-flask-sqlalchemy" ,python2-flask-sqlalchemy)
("python2-setuptools" ,python2-setuptools)
("python2-scipy" ,python2-scipy)
;; looks like python-numarray is not needed
("python2-mysqlclient" ,python2-mysqlclient)
+ ("python2-numarray" ,python2-numarray)
("python2-numpy" ,python2-numpy)
("python2-pandas" ,python2-pandas)
("python2-passlib" ,python2-passlib)
+ ("python2-piddle" ,python2-piddle)
("python2-redis" ,python2-redis)
("python2-requests" ,python2-requests)
+ ("python2-rpy2" ,python2-rpy2)
+ ("python2-scipy" ,python2-scipy)
("python2-simplejson" ,python2-simplejson)
("python2-pyyaml" ,python2-pyyaml)
("python-xlsxwriter" ,python-xlsxwriter)
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 09251d7..70d10f9 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -79,6 +79,34 @@
(define-public python2-flask
(package-with-python2 python-flask))
+(define-public python-flask-sqlalchemy
+ (package
+ (name "python-flask-sqlalchemy")
+ (version "2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "Flask-SQLAlchemy" version))
+ (sha256
+ (base32
+ "1i9ps5d5snih9xlqhrvmi3qfiygkmqzxh92n25kj4pf89kj4s965"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-setuptools" ,python-setuptools)
+ ("python-flask" ,python-flask)
+ ("python-sqlalchemy" ,python-sqlalchemy)
+ ))
+ (home-page
+ "http://github.com/mitsuhiko/flask-sqlalchemy")
+ (synopsis
+ "Adds SQLAlchemy support to your Flask application")
+ (description
+ "Adds SQLAlchemy support to your Flask application")
+ (license license:bsd-3)))
+
+(define-public python2-flask-sqlalchemy
+ (package-with-python2 python-flask-sqlalchemy))
+
(define-public python-xlsxwriter
(package
(name "python-xlsxwriter")
@@ -329,6 +357,37 @@ project)")
(description #f)
(license #f)))
+(define-public python2-piddle
+ (package
+ (name "python2-piddle")
+ (version "1.0.15")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ ;; http://sourceforge.net/projects/numpy/files/Old%20Numarray/1.5.2/numarray-1.5.2.tar.gz/download
+ "mirror://sourceforge/piddle/piddle-" version ".zip"
+ ))
+ ;; (file-name (string-append name "-" version ".zip"))
+ (sha256
+ (base32
+ "0jaxfsrcgqb5cf2wznxnpdws5khlrdixmg85lrhq2zl9cy6dfdya"))))
+ (native-inputs
+ `(("unzip" ,unzip)))
+
+ (build-system python-build-system)
+ ;; (native-inputs
+ ;; `(("python-setuptools" ,python-setuptools)))
+ (arguments
+ `(#:python ,python-2
+ #:tests? #f
+ )) ; no 'setup.py test' really!
+ (home-page "http://www.numpy.org/")
+ (synopsis "Canvas drawing library for python2 (old!)")
+ (description #f)
+ (license #f)))
+
+
(define-public python2-numarray
(package
(name "python2-numarray")