diff options
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/genenetwork.scm | 46 |
1 files changed, 42 insertions, 4 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index aec305b..54c9fce 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -87,7 +87,6 @@ (description #f) (license #f))) - (define-public genenetwork1 (let ((commit "d622c803b")) (package @@ -141,7 +140,7 @@ (license license:agpl3+)))) (define-public genenetwork2 - (let ((commit "8c9de7e5a2016f1e5b7397be1a8e84396e3a25c5")) + (let ((commit "3d55e84c81ae6c10765c79b6dfa18ccf30e98b53")) (package (name "genenetwork2") (version (string-append "2.0-" (string-take commit 7) )) @@ -149,12 +148,12 @@ (method git-fetch) (uri (git-reference ;; (url "https://github.com/genenetwork/genenetwork2.git") - (url "https://github.com/pjotrp/genenetwork2.git") + (url "https://github.com/genenetwork/genenetwork2_diet.git") (commit commit))) (file-name (string-append name "-" (string-take commit 7))) (sha256 (base32 - "1kgigzs4rs6zgbqbnm40rcljzz9prlwv7n2n9an57jk58bjgf6v8")))) + "0pmf96hsmxpiczkh4c2zpq5zz6byklhw4vjrazn9qvrgh78aqyab")))) (propagated-inputs `( ;; propagated for development purposes ("python" ,python-2) ;; probably superfluous ("r" ,r) @@ -204,6 +203,45 @@ ;; ./pre-inst-env guix download http://files.genenetwork.org/raw_database/db_webqtl_s.zip ;; 0sscjh0wml2lx0mb43vf4chg9gpbfi7abpjxb34n3kyny9ll557x +(define-public genenetwork2-files-small + (let ((pfff "xx")) + (package + (name "genenetwork2-files-small") + (version "1.0") + (source + (origin + (method url-fetch) + (uri "http://files.genenetwork.org/data_files/gn2_data_s-20160303-C9E672ECED1F51B915DE419B5B2C524E.tar.lz4") + (file-name (string-append name "-" pfff)) + (sha256 + (base32 "058ymx3af6abdhdxyxj0i9qfvb6v7j091frjpp6jh4ahks7r23lj")))) + (build-system trivial-build-system) + (native-inputs `(("lz4" ,lz4) + ("tar" ,tar) + ("source" ,source))) + + (arguments + `(#:modules ((guix build utils)) + #:builder + (let* ((out (assoc-ref %outputs "out")) + ;; (targetdir (string-append out "/gn2_data_s")) + ) + (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (lz4unpack (string-append (assoc-ref %build-inputs "lz4") "/bin/lz4")) + (tar (string-append (assoc-ref %build-inputs "tar") "/bin/tar")) + ) + (and ;; (mkdir targetdir) + (zero? (system* lz4unpack source "-d" "xx.tar")) + (zero? (system* tar "xf" "xx.tar")) + (copy-recursively "gn2_data_s" (string-append out "/gn2_data_s")) + )))))) + (home-page "http://genenetwork.org/") + (synopsis "Small file archive to run on genenetwork") + (description "Genenetwork genotype and mapping files.") + (license license:agpl3+)))) + (define-public genenetwork2-database-small (let ((md5 "93e745e9c")) (package |