diff options
Diffstat (limited to 'gn/services/genenetwork.scm')
| -rw-r--r-- | gn/services/genenetwork.scm | 68 |
1 files changed, 38 insertions, 30 deletions
diff --git a/gn/services/genenetwork.scm b/gn/services/genenetwork.scm index 0137e94..7de1821 100644 --- a/gn/services/genenetwork.scm +++ b/gn/services/genenetwork.scm @@ -3,17 +3,10 @@ (use-modules (gnu) (ice-9 match) (past packages python) + (past packages web) (gn packages genenetwork) - (gn packages python24) - (gn packages web)) + (gn packages python24)) (use-service-modules web) -(use-package-modules python) - -(define %python-path - "/lib/python2.4/site-packages") - -(define %mod-python-path - (file-append httpd22-mod-python-24 %python-path)) (define %default-httpd22-modules (map (match-lambda @@ -82,28 +75,32 @@ (firmware '()) (packages (cons* python-2.4 - ;httpd-mod-python-24 - ;python24-qtlreaper - ;python24-htmlgen-GN1 - ;python24-json-GN1 - ;python24-piddle - ;python24-pyx-GN1 - ;python24-pyxlwriter - ;python24-svg-GN1 + python24-htmlgen-GN1 + python24-json-GN1 + python24-mysqlclient ; MySQLdb + python24-numarray + python24-piddle + python24-pp + python24-pyx + python24-pyxlwriter + python24-qtlreaper + python24-svg-GN1 %base-packages)) (services (list (service httpd-service-type (httpd-configuration - (package httpd22-mod-python-24) ; Must be httpd-2.2? + ;; Must be a httpd-2.2 variant. + (package httpd22-with-mod-python) (config (httpd-config-file (server-name "www.genenetwork.org") - (server-root httpd22-mod-python-24) ; Defaults to httpd, must be combo package. + ;; Defaults to httpd, should be same as 'package' above. + (server-root httpd22-with-mod-python) (user "nobody") (group "root") + ;; Only while debugging (pid-file "/tmp/httpd-genenetwork1") (error-log "/tmp/httpd-genenetwork1-error-log") - (document-root (file-append genenetwork1 "/web")) (listen '("8042")) (modules (cons* (httpd-module @@ -111,21 +108,32 @@ (file "modules/mod_python.so")) %default-httpd22-modules)) (extra-config (list "\ -TypesConfig etc/httpd/mime.types -#for apache-2.2, ignored by apache-2.4 +TypesConfig " httpd22-with-mod-python "/etc/httpd/mime.types DefaultType application/octet-stream -# Should PythonPath just be genenetwork1/web/webqtl? -PythonPath \"sys.path+['" (file-append python-2.4 "/lib/python2.4") "', '" %mod-python-path "', '" (file-append genenetwork1 "/web/webqtl") "']\" -<Directory " (file-append genenetwork1 "/web/webqtl") "> - AddHandler mod_python .py - PythonHandler mod_python.publisher - PythonAutoReload Off +# DocumentRoot MUST NOT be in the PythonPath. Because genenetwork1 must be in PythonPath we leave the document-root keyword above unset. +PythonPath \"['/run/current-system/profile/lib/python2.4', '/run/current-system/profile/lib/python2.4/site-packages', '" httpd22-with-mod-python "/lib/python2.4/site-packages', '" genenetwork1 "/web/webqtl']\" +# same as 'listen' above +NameVirtualHost *:8042 +<VirtualHost *:8042> + DocumentRoot "genenetwork1 "/web +</VirtualHost> +<Directory " genenetwork1 "/web/webqtl> + PythonOption session FileSession + #what is the difference between these two? + #AddHandler mod_python .py + SetHandler python-program + #publisher has more debug information + PythonHandler " genenetwork1 "/web/webqtl/main.py + #PythonHandler mod_python.publisher + #PythonHandler mod_python.cgihandler + # only while debugging: PythonDebug On </Directory> +# only while debugging: <Location /mpinfo> SetHandler python-program PythonHandler mod_python.testhandler </Location>"))))))))) -;PythonPath \"sys.path+['" (file-append python-2.4 "/lib/python2.4") "', '" %mod-python-path "', '" (file-append python24-qtlreaper %python-path) "', '" (file-append python24-json-GN1 %python-path) "', '" (file-append python24-piddle %python-path) "', '" (file-append python24-pyx-GN1 %python-path) "', '" (file-append python24-pyxlwriter-GN1 %python-path) "', '" (file-append python24-svg-GN1 %python-path) "', '" (file-append python24-htmlgen-GN1) "', '" (file-append genenetwork1 "/web/webqtl") "']\" -;PythonPath \"sys.path+['" (file-append python-2.4 "/lib/python2.4") "', '" %mod-python-path "', '" (file-append genenetwork1 "/web/webqtl") "']\" +;; guix system container -L /path/to/guix-past/modules/ -L /path/to/guix-bioinformatics/ /path/to/guix-bioinformatics/gn/services/genenetwork.scm --network +;; xdg-open http://localhost:8042 |