diff options
Diffstat (limited to 'gn/services/genenetwork.scm')
| -rw-r--r-- | gn/services/genenetwork.scm | 35 |
1 files changed, 22 insertions, 13 deletions
diff --git a/gn/services/genenetwork.scm b/gn/services/genenetwork.scm index bf09270..8f5bfc4 100644 --- a/gn/services/genenetwork.scm +++ b/gn/services/genenetwork.scm @@ -9,12 +9,6 @@ (use-service-modules web) (use-package-modules python) -(define %python-path - "/lib/python2.4/site-packages") - -(define %mod-python-path - (file-append httpd22-mod-python-24 %python-path)) - (define %default-httpd22-modules (map (match-lambda ((name file) @@ -85,7 +79,10 @@ python24-qtlreaper python24-htmlgen-GN1 python24-json-GN1 + python24-mysqlclient ; MySQLdb + python24-numarray python24-piddle + python24-pp-GN1 python24-pyx-GN1 python24-pyxlwriter python24-svg-GN1 @@ -97,13 +94,13 @@ (config (httpd-config-file (server-name "www.genenetwork.org") - ;; Defaults to httpd, largely irrelevant. + ;; Defaults to httpd, should be same as 'package' above. (server-root httpd22-mod-python-24) (user "nobody") (group "root") + ;; Only while debugging (pid-file "/tmp/httpd-genenetwork1") (error-log "/tmp/httpd-genenetwork1-error-log") - (document-root (file-append genenetwork1 "/web")) (listen '("8042")) (modules (cons* (httpd-module @@ -111,20 +108,32 @@ (file "modules/mod_python.so")) %default-httpd22-modules)) (extra-config (list "\ -TypesConfig etc/httpd/mime.types +TypesConfig " httpd22-mod-python-24 "/etc/httpd/mime.types DefaultType application/octet-stream -#DocumentRoot MUST NOT be in the PythonPath -PythonPath \"['/run/current-system/profile/lib/python2.4', '" httpd22-mod-python-24 "/lib/python2.4/site-packages']\" +# DocumentRoot MUST NOT be in the PythonPath. Because genenetwork1 must be in PythonPath we leave the document-root keyword above unset. +PythonPath \"['/run/current-system/profile/lib/python2.4', '/run/current-system/profile/lib/python2.4/site-packages', '" httpd22-mod-python-24 "/lib/python2.4/site-packages', '" genenetwork1 "/web/webqtl']\" +# same as 'listen' above +NameVirtualHost *:8042 +<VirtualHost *:8042> + DocumentRoot "genenetwork1 "/web +</VirtualHost> <Directory " genenetwork1 "/web/webqtl> + PythonOption session FileSession + #what is the difference between these two? #AddHandler mod_python .py SetHandler python-program + #publisher has more debug information + PythonHandler " genenetwork1 "/web/webqtl/main.py #PythonHandler mod_python.publisher - PythonHandler mod_python.cgihandler - #PythonAutoReload Off + #PythonHandler mod_python.cgihandler # only while debugging: PythonDebug On </Directory> +# only while debugging: <Location /mpinfo> SetHandler python-program PythonHandler mod_python.testhandler </Location>"))))))))) + +;; guix system container -L /path/to/guix-past/modules/ -L /path/to/guix-bioinformatics/ /path/to/guix-bioinformatics/gn/services/genenetwork.scm --network +;; xdg-open http://localhost:8042 |