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-rw-r--r--gn/packages/bioinformatics.scm3
-rw-r--r--gn/packages/crates-io.scm59
2 files changed, 28 insertions, 34 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 55977bf..3d6a062 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -490,9 +490,6 @@ reads.")
(("\"0.7\"")
"{ version = \"0.7.0-alpha.9\" }"))
#t)))))
- (inputs
- ;; rust-handlegraph@0.7 doesn't get picked up as a rust input.
- `(("rust-handlegraph-0.7" ,rust-handlegraph-0.7)))
(home-page "https://github.com/marschall-lab/GFAffix")
(synopsis "Identify walk-preserving shared affixes in variation graphs")
(description
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index 3440985..da9e3de 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -75,37 +75,34 @@
(license license:expat)))
(define-public rust-handlegraph-0.7
- ;; After this commit try the next actual release.
- (let ((commit "a7ca8da640ae442ffd3ef4f5f9f358cd37c7deee")
- (revision "1"))
- (package
- (inherit rust-handlegraph-0.3)
- (name "rust-handlegraph")
- (version (git-version "0.7.0-alpha.9" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/chfi/rs-handlegraph")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "19cxgysxam79k6skanh4q4hafi4aglzcmg5hmm3vfnrzbz9q6js0"))))
- (arguments
- `(#:rust ,rust-1.47 ; or later
- #:cargo-inputs
- (("rust-anyhow" ,rust-anyhow-1)
- ("rust-boomphf" ,rust-boomphf-0.5)
- ("rust-bstr" ,rust-bstr-0.2)
- ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5)
- ("rust-fnv" ,rust-fnv-1)
- ("rust-gfa" ,rust-gfa-0.10)
- ("rust-log" ,rust-log-0.4)
- ("rust-rayon" ,rust-rayon-1)
- ("rust-succinct" ,rust-succinct-0.5))
- #:cargo-development-inputs
- (("rust-quickcheck" ,rust-quickcheck-0.9)
- ("rust-rand" ,rust-rand-0.7)))))))
+ (package
+ (inherit rust-handlegraph-0.3)
+ (name "rust-handlegraph")
+ (version "0.7.0-alpha.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "handlegraph" version))
+ (file-name
+ (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1frlcdwhycjvizb0gfb0v36vxjdi0jxagl2l2v6dzdjxpaawv9rs"))))
+ (arguments
+ `(#:rust ,rust-1.47 ; or later
+ #:cargo-inputs
+ (("rust-anyhow" ,rust-anyhow-1)
+ ("rust-boomphf" ,rust-boomphf-0.5)
+ ("rust-bstr" ,rust-bstr-0.2)
+ ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5)
+ ("rust-fnv" ,rust-fnv-1)
+ ("rust-gfa" ,rust-gfa-0.10)
+ ("rust-log" ,rust-log-0.4)
+ ("rust-rayon" ,rust-rayon-1)
+ ("rust-succinct" ,rust-succinct-0.5))
+ #:cargo-development-inputs
+ (("rust-quickcheck" ,rust-quickcheck-0.9)
+ ("rust-rand" ,rust-rand-0.7))))))
(define-public rust-quick-csv-0.1
(package