diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/book_evolutionary_genomics.scm | 42 |
1 files changed, 2 insertions, 40 deletions
diff --git a/gn/packages/book_evolutionary_genomics.scm b/gn/packages/book_evolutionary_genomics.scm index af4bf89..56b0572 100644 --- a/gn/packages/book_evolutionary_genomics.scm +++ b/gn/packages/book_evolutionary_genomics.scm @@ -10,7 +10,6 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system perl) #:use-module (guix build-system python) - ;; #:use-module (guix build-system ruby) #:use-module (guix build-system r) #:use-module (guix build-system trivial) @@ -18,11 +17,7 @@ #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages compression) - ; #:use-module (gnu packages gcc) - ; #:use-module (gnu packages graphviz) - ; #:use-module (gnu packages java) - ; #:use-module (gnu packages linux) - ; #:use-module (gnu packages ldc) + #:use-module (gnu packages cran) #:use-module (gnu packages libffi) #:use-module (gnu packages perl) #:use-module (gnu packages python) @@ -30,14 +25,11 @@ #:use-module (gnu packages statistics) #:use-module (gnu packages tls) #:use-module (gnu packages vim) - ; #:use-module (gnu packages web) - ; #:use-module (gnu packages xml) #:use-module (gnu packages version-control) #:use-module (gn packages bioinformatics) #:use-module (gn packages javascript) #:use-module (gn packages python) - ; #:use-module (gn packages statistics) #:use-module (srfi srfi-1)) (define-public r-gener ;; poor implementation @@ -81,36 +73,6 @@ ".") (license license:expat))) ; CeCILL-2.0 -(define-public r-rserve - (package - (name "r-rserve") - (version "1.8-4") - (source - (origin - (method url-fetch) - (uri "https://github.com/s-u/Rserve/releases/download/1.8-4/Rserve_1.8-4.tar.gz") - (sha256 - (base32 - "1dncwiyhy1s1pimb6f2dzs3ivahah5id3chw4r10j92754bxmrn2")))) - (propagated-inputs - `(("r" ,r))) - (inputs `(("zlib" ,zlib) - ("openssl" ,openssl))) - - (build-system r-build-system) - (home-page "https://github.com/s-u/Rserve") - (synopsis "Fast, flexible and powerful server providing access to R from many languages and systems http://RForge.net/Rserve") - (description - "Rserve acts as a socket server (TCP/IP or local sockets) which -allows binary requests to be sent to R. Every connection has a -separate workspace and working directory. Client-side implementations -are available for popular languages such as C/C++ and Java, allowing -any application to use facilities of R without the need of linking to -R code. Rserve supports remote connection, user authentication and -file transfer. A simple R client is included in this package as -well.") - (license license:gpl2))) - (define-public book-evolutionary-genomics (let ((commit "53a7aefefcedd52b94b38195f8daae94c07d89db")) (package @@ -131,7 +93,7 @@ well.") (propagated-inputs `(("python" ,python) ("python-biopython" ,python-biopython) - ("python-rserve" ,python-rserve) + ; ("python-rserve" ,python-rserve) ("r" ,r) ("r-gener" ,r-gener) ("r-biostrings" ,r-biostrings) |