diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/julia.scm | 390 |
1 files changed, 0 insertions, 390 deletions
diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm index 8042fac..7e181a9 100644 --- a/gn/packages/julia.scm +++ b/gn/packages/julia.scm @@ -236,82 +236,6 @@ module. PyPlot uses the Julia PyCall package to call Matplotlib directly from Julia with little or no overhead (arrays are passed without making a copy).") (license license:expat)))) -;; ready to upstream -(define-public julia-pycall - (package - (name "julia-pycall") - (version "1.92.3") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaPy/PyCall.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq")))) - (build-system julia-build-system) - (arguments - `(#:imported-modules ((guix build python-build-system) - ,@%julia-build-system-modules) - #:modules ((guix build julia-build-system) - (guix build utils) - ((guix build python-build-system) #:prefix python:)) - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'remove-conda - (lambda _ - (substitute* "Project.toml" - ((".*Conda.*") "")) - (substitute* (list "src/PyCall.jl" - "test/runtests.jl") - (("import Conda") "")) - (substitute* "deps/depsutils.jl" - (("Conda.PYTHONDIR") "\"/\"")) - #t)) - (add-after 'unpack 'set-python - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((python (assoc-ref inputs "python"))) - (setenv "PYCALL_JL_RUNTIME_PYTHON" - (string-append python "/bin/python3")) - (with-output-to-file "deps/deps.jl" - (lambda _ - (format #t - "const python = \"~a/bin/python3\"~@ - const pyprogramname = \"~a/bin/python3\"~@ - const libpython = \"~a/lib/libpython~a.so.1.0\"~@ - const PYTHONHOME = \"~a\"~@ - const pyversion_build = v\"~a\"~@ - const conda = false~%" - python - python - python - (python:python-version python) - python - ,(package-version python)))) - #t))) - (add-before 'check 'pre-check - (lambda _ - (setenv "CI" "true") - (setenv "JULIA_PKGEVAL" "true") - #t))))) - (propagated-inputs - `(("julia-macrotools" ,julia-macrotools) - ("julia-versionparsing" ,julia-versionparsing))) - (inputs - `(("python" ,python))) - (native-inputs - `(("python-numpy" ,(@ (gnu packages python-xyz) python-numpy)))) - (home-page "https://github.com/JuliaPy/PyCall.jl") - (synopsis "Call Python functions from the Julia language") - (description "This package provides the ability to directly call and fully -interoperate with Python from the Julia language. You can import arbitrary -Python modules from Julia, call Python functions (with automatic conversion of -types between Julia and Python), define Python classes from Julia methods, and -share large data structures between Julia and Python without copying them.") - (license license:expat))) - (define-public julia-conda (package (name "julia-conda") @@ -439,239 +363,6 @@ properties @end enumerate") (license license:expat))) -;; ready to upstream! -;; By removing all the javascript and css downloads any HTML documentation -;; produced by this package will not be very useful. -(define-public julia-documenter - (package - (name "julia-documenter") - (version "0.27.6") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaDocs/Documenter.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj")))) - (build-system julia-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-source - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "src/Deps.jl" - (("pip install") - (string-append (assoc-ref inputs "python") - "/bin/pip install"))) - #t)) - (add-after 'unpack 'remove-javascript-downloads - (lambda _ - (substitute* "src/Writers/HTMLWriter.jl" - (("cdnjs.cloudflare.com") "example.com")) - ;; Removing the javascript downloads causes these tests fail. - (substitute* "test/examples/tests.jl" - ((".*Main\\.examples_html_doc.*") "") - ((".*Main\\.examples_html_mathjax3_doc.*") "")) - #t))))) - (propagated-inputs - `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters) - ("julia-docstringextensions" ,julia-docstringextensions) - ("julia-iocapture" ,julia-iocapture) - ("julia-json" ,julia-json))) - (inputs - `(("python" ,python-wrapper))) - (native-inputs - `(("git" ,(S "git-minimal")) - ("julia-documentermarkdown" ,julia-documentermarkdown) - ("julia-documentertools" ,julia-documentertools))) - (home-page "https://juliadocs.github.io/Documenter.jl") - (synopsis "Documentation generator for Julia") - (description "This package provides a documentation generator for Julia.") - (license license:expat))) - -;; ready to upstream with julia-documenter -(define-public julia-documenter-0.22 - (package - (inherit julia-documenter) - (name "julia-documenter") - (version "0.22.6") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaDocs/Documenter.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5")))) - (arguments - `(#:tests? #f ; Some tests require network. - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'remove-javascript-downloads - (lambda _ - ;; This isn't problematic because we only use - ;; this package for bootstrapping. - (substitute* '("assets/html/documenter.js" - "assets/html/search.js" - "src/Writers/HTMLWriter.jl") - (("cdnjs.cloudflare.com") "example.com")) - #t))))) - (propagated-inputs - `(("julia-docstringextensions" ,julia-docstringextensions) - ("julia-json" ,julia-json))) - (inputs `()) - (native-inputs `()) - (properties '((hidden? . #t))))) - -;; ready to upstream; depends on julia-documenter -(define-public julia-documentermarkdown - (package - (name "julia-documentermarkdown") - (version "0.2.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8")))) - (build-system julia-build-system) - (inputs - ;; We don't want to propagate the bootstrap version. - ;; Cycle with Documenter.jl in later versions. - `(("julia-documenter" ,julia-documenter-0.22))) - (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl") - (synopsis "Documenter's Markdown") - (description "This package enables the Markdown / MkDocs backend of -@code{Documenter.jl}.") - (license license:expat))) - -(define-public julia-documentertools - (package - (name "julia-documentertools") - (version "0.1.13") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaDocs/DocumenterTools.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6")))) - (build-system julia-build-system) - (arguments - `(#:tests? #f)) ; Tests require network. - (inputs - ;; We don't want to propagate the bootstrap version. - ;; Cycle with Documenter.jl in later versions. - `(("julia-documenter" ,julia-documenter-0.22))) - (propagated-inputs - `(("julia-docstringextensions" ,julia-docstringextensions) - ("julia-gumbo" ,julia-gumbo) - ("julia-sass" ,julia-sass))) - (native-inputs - `(("julia-example" ,julia-example))) - (home-page "https://github.com/JuliaDocs/DocumenterTools.jl") - (synopsis "Extra tools for setting up Documenter") - (description "This package contains utilities for setting up documentation -generation with @code{Documenter.jl}.") - (license license:expat))) - -;; raedy to upstream -(define-public julia-ansicoloredprinters - (package - (name "julia-ansicoloredprinters") - (version "0.0.1") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf")))) - (build-system julia-build-system) - (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl") - (synopsis "ANSI escape code translator") - (description "@code{ANSIColoredPrinters.jl} converts a text qualified by -ANSI escape codes to another format.") - (license license:expat))) - -;; ready to upstream -(define-public julia-sass - (package - (name "julia-sass") - (version "0.2.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/piever/Sass.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92")))) - (build-system julia-build-system) - (propagated-inputs - `(("julia-libsass-jll" ,julia-libsass-jll))) - (home-page "https://github.com/piever/Sass.jl") - (synopsis "Compile scss and sass file to css in Julia") - (description "This library provides a simple Julian API to use the -@code{libsass} library to compile scss and sass files to css.") - (license license:expat))) - -;; ready to upstream -(define-public julia-libsass-jll - (let ((commit "69bf10603aad0ebf1f6df088c5fd7c4a5d1eb0ca")) - (package - (name "julia-libsass-jll") - (version "3.5.5+0") ;tag not created upstream - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaBinaryWrappers/libsass_jll.jl") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1fb6rf422533bsmfslvc20ag1hr50bf9xaj32rvh7nv593sbiygn")))) - (build-system julia-build-system) - (arguments - `(#:tests? #f ; no runtests.jl - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path - (lambda* (#:key inputs #:allow-other-keys) - (map - (lambda (wrapper) - (substitute* wrapper - (("generate_wrapper_header.*") - (string-append - "generate_wrapper_header(\"libsass\", \"" - (assoc-ref inputs "libsass") "\")\n")))) - ;; There's a Julia file for each platform, override them all - (find-files "src/wrappers/" "\\.jl$")) - #t))))) - (inputs - `(("libsass" ,(@ (gnu packages web) libsass)))) - (propagated-inputs - `(("julia-jllwrappers" ,julia-jllwrappers))) - (home-page "https://github.com/JuliaBinaryWrappers/libsass_jll.jl") - (synopsis "Julia wrapper for libsass") - (description "This package provides a wrapper for libsass. It is an -autogenerated source package constructed using @code{BinaryBuilder.jl}. The -originating @code{build_tarballs.jl} script can be found on the community -build tree Yggdrasil.") - (license license:expat)))) - ;; ready to upstream ;; if the test suite passes (define-public julia-optim @@ -998,29 +689,6 @@ metaprogramming on Julia Expr, the meta programming standard library for (license license:expat))) ;; ready to upstream -(define-public julia-mlstyle - (package - (name "julia-mlstyle") - (version "0.4.10") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/thautwarm/MLStyle.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059")))) - (build-system julia-build-system) - (native-inputs - `(("julia-datastructures" ,julia-datastructures))) - (home-page "https://thautwarm.github.io/MLStyle.jl/latest/") - (synopsis "Julia functional programming infrastructures") - (description "This package provides consistent and extensible functional -programming infrastructures, and metaprogramming facilities.") - (license license:expat))) - -;; ready to upstream (define-public julia-statsfuns (package (name "julia-statsfuns") @@ -1778,61 +1446,3 @@ in Julia).") (synopsis "binary provider for Julia") (description "Packages are installed to a @code{Prefix}; a folder that acts similar to the @code{/usr/local} directory on Unix-like systems, containing a @code{bin} folder for binaries, a @code{lib} folder for libraries, etc... @code{Prefix} objects can have tarballs @code{install()}'ed within them, @code{uninstall()}'ed from them, etc...") (license license:expat))) - -;; ready to upstream -(define-public julia-measurements - (package - (name "julia-measurements") - (version "2.6.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaPhysics/Measurements.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz")))) - (build-system julia-build-system) - (propagated-inputs - `(("julia-calculus" ,julia-calculus) - ("julia-recipesbase" ,julia-recipesbase) - ("julia-requires" ,julia-requires))) - (native-inputs - `(("julia-specialfunctions" ,julia-specialfunctions) - ("julia-quadgk" ,julia-quadgk) - ("julia-unitful" ,julia-unitful))) - (home-page "https://juliaphysics.github.io/Measurements.jl/stable/") - (synopsis "Error propagation calculator and library") - (description "@code{Measurements.jl} is an error propagation calculator and -library for physical measurements. It supports real and complex numbers with -uncertainty, arbitrary precision calculations, operations with arrays, and -numerical integration. The linear error propagation theory is employed to -propagate the errors.") - (license license:expat))) - -;; ready to upstream -(define-public julia-quadgk - (package - (name "julia-quadgk") - (version "2.4.1") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaMath/QuadGK.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33")))) - (build-system julia-build-system) - (propagated-inputs - `(("julia-datastructures" ,julia-datastructures))) - (home-page "https://github.com/JuliaMath/QuadGK.jl") - (synopsis "Adaptive 1d numerical Gauss–Kronrod integration in Julia") - (description "This package provides support for one-dimensional numerical -integration in Julia using adaptive Gauss-Kronrod quadrature. The code was -originally part of Base Julia. It supports integration of arbitrary numeric -types, including arbitrary precision (@code{BigFloat}), and even integration of -arbitrary normed vector spaces (e.g. matrix-valued integrands).") - (license license:expat))) |