diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/genenetwork.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 987cf61..4386aff 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -54,6 +54,7 @@ #:use-module (gn packages javascript) #:use-module (gn packages phewas) #:use-module (gn packages python) + #:use-module (gn packages python24) #:use-module (gn packages statistics) #:use-module (srfi srfi-1)) @@ -168,6 +169,41 @@ bootstrap resampling to estimate the confidence region for the location of a putative QTL.") (license license:gpl2+)))) +(define-public python24-qtlreaper + (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) + (package + (name "python24-qtlreaper") + (version (string-append "1.1-gn2-" (string-take commit 7) )) + (source (origin + (method git-fetch) + (uri (git-reference + ;; (url "https://github.com/genenetwork/genenetwork2.git") + (url "https://github.com/pjotrp/QTLreaper.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7))) + (sha256 + (base32 + "1ldcvyk8y8w6f4ci04hzx85sknd5a3h424p5bfi4fz32sm2p7fja")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2.4 + #:tests? #f)) ; no 'setup.py test' really! + (native-inputs + `(("python24-setuptools" ,python24-setuptools))) + (home-page "http://qtlreaper.sourceforge.net/") + (synopsis "Scan expression data for QTLs") + (description + "Batch-oriented version of WebQTL. It requires, as input, +expression data from members of a set of recombinant inbred lines and +genotype information for the same lines. It searches for an +association between each expression trait and all genotypes and +evaluates that association by a permutation test. For the permutation +test, it performs only as many permutations as are necessary to define +the empirical P-value to a reasonable precision. It also performs +bootstrap resampling to estimate the confidence region for the +location of a putative QTL.") + (license license:gpl2+)))) + (define-public python-qtlreaper (let ((commit "dd9c7fb2a9d5fa40b4054e1bcb7c57905d98d5f8")) (package |