diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 35 | ||||
| -rw-r--r-- | gn/packages/genenetwork.scm | 35 |
2 files changed, 35 insertions, 35 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index f62949d..b509fc3 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -772,41 +772,6 @@ to sample traits. Also includes a number of utility functions for data manipulation and visualization.") (license license:gpl2+)))) -(define-public qtlreaper - (package - (name "qtlreaper") - (version "1.1.1") - (source - (origin - (method url-fetch) - (uri (string-append - "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz" - ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb")) - )) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x")))) - (build-system python-build-system) - ;; (native-inputs - ;; `(("python-setuptools" ,python-setuptools))) - (arguments - `(#:python ,python-2 - #:tests? #f)) ; no 'setup.py test' - (home-page "http://qtlreaper.sourceforge.net/") - (synopsis "Tool for scanning expression data for QTLs") - (description - "It is essentially the batch-oriented version of WebQTL. It -requires, as input, expression data from members of a set of -recombinant inbred lines and genotype information for the same -lines. It searches for an association between each expression trait -and all genotypes and evaluates that association by a permutation -test. For the permutation test, it performs only as many permutations -as are necessary to define the empirical P-value to a reasonable -precision. It also performs bootstrap resampling to estimate the -confidence region for the location of a putative QTL.") - (license license:gpl2+))) - (define-public plink2 (package (name "plink2") diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index a7317c6..d8a1813 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -87,6 +87,41 @@ (description #f) (license #f))) +(define-public qtlreaper + (package + (name "qtlreaper") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz" + ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb")) + )) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x")))) + (build-system python-build-system) + ;; (native-inputs + ;; `(("python-setuptools" ,python-setuptools))) + (arguments + `(#:python ,python-2 + #:tests? #f)) ; no 'setup.py test' + (home-page "http://qtlreaper.sourceforge.net/") + (synopsis "Tool for scanning expression data for QTLs") + (description + "Batch-oriented version of WebQTL. It requires, as input, +expression data from members of a set of recombinant inbred lines and +genotype information for the same lines. It searches for an +association between each expression trait and all genotypes and +evaluates that association by a permutation test. For the permutation +test, it performs only as many permutations as are necessary to define +the empirical P-value to a reasonable precision. It also performs +bootstrap resampling to estimate the confidence region for the +location of a putative QTL.") + (license license:gpl2+))) + (define-public genenetwork1 (let ((commit "d622c803b")) (package |