diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index dc1ff65..8d4edaa 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2476,7 +2476,6 @@ of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet)." (arguments `(#:configure-flags '("-DUSE_SYSTEM_ZSTD=YES") #:substitutable? #f ; We want the native build. - #:tests? #f ; TODO #:phases (modify-phases %standard-phases (add-after 'unpack 'use-shared-libraries @@ -2490,13 +2489,20 @@ of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet)." (string-append (assoc-ref inputs "xxhash") "/include")) (("lib/simde") (string-append (assoc-ref inputs "simde") "/include/simde"))) - #t))))) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion + (string-append "../" ,name "-" ,version "-checkout/tests") + (invoke "./run.sh" "../../build/src/metaeuk")))))))) (inputs `(("bzip2" ,bzip2) ("zlib" ,zlib) ("zstd:lib" ,zstd "lib"))) (native-inputs `(;("gzstream" ,gzstream) + ("perl" ,perl) ("simde" ,simde) ("xxd" ,xxd) ("xxhash" ,xxhash))) |