diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 18 |
1 files changed, 8 insertions, 10 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index eb495f9..d6972d6 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -88,18 +88,16 @@ (delete 'configure) (delete 'build) ; We can use Guix's BEDtools instead. (replace 'install - (lambda _ - (let* ((out (assoc-ref %outputs "out")) + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) (doc (string-append out "/share/doc/contra"))) - (mkdir-p bin) - (mkdir-p doc) - (and - (zero? (system* "cp" "--recursive" "scripts" bin)) - (zero? (system* "cp" "contra.py" bin)) - (zero? (system* "cp" "baseline.py" bin)) - ;; There's only a pre-built PDF available. - (zero? (system* "cp" "CONTRA_User_Guide.2.0.pdf" doc))))))))) + (copy-recursively "scripts" (string-append bin "/scripts")) + (install-file "contra.py" bin) + (install-file "baseline.py" bin) + ;; There's only a pre-built PDF available. + (install-file "CONTRA_User_Guide.2.0.pdf" doc)) + #t))))) (home-page "http://contra-cnv.sourceforge.net/") (synopsis "Tool for copy number variation (CNV) detection for targeted resequencing data") |