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-rw-r--r--gn/packages/bioinformatics.scm44
1 files changed, 42 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 94e1839..e243db3 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -418,6 +418,45 @@ association studies (GWAS).")
(description "Genenetwork installation sumo.")
(license license:agpl3+))))
+(define-public rdmd
+ (package
+ (name "rdmd")
+ (version "20160217")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/D-Programming-Language/tools.git")
+ (commit "4dba6877c481c1a911a7d50714da8fbd80022f0e")))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1pcx5lyqzrip86f4vv60x292rpvnwsq2hvl1znm9x9rn68f34m45"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'check)
+ (replace
+ 'build
+ (lambda* _
+ (zero? (system* "ldc2" "rdmd.d"))))
+ (replace
+ 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+ (mkdir-p bin)
+ (copy-file "rdmd" (string-append bin "/rdmd"))))))))
+ (native-inputs
+ `(("gcc" ,gcc)
+ ("ldc" ,ldc)))
+ (home-page "https://github.com/D-Programming-Language/tools/")
+ (synopsis "Extra tools for building D programs")
+ (description
+ "This repository hosts various tools redistributed with DMD or used
+internally during various build tasks.")
+ (license license:boost1.0)))
+
(define-public sambamba
(package
(name "sambamba")
@@ -443,6 +482,7 @@ association studies (GWAS).")
;;("phobos2-ldc" ,phobos2-ldc)
("lz4" ,lz4)
("gcc" ,gcc)
+ ("rdmd" ,rdmd)
("htslib-src"
,(origin
(method url-fetch)
@@ -451,7 +491,7 @@ association studies (GWAS).")
(file-name (string-append "htslib-0.2.0-rc10.tar.gz"))
(sha256
(base32 "1k6dlf6m8yayhcp7b4yisgw1xqdy1xg2xyrllss6ld0wg00hfcbs"))))
- ("biod-src"
+ ("biod"
,(origin
(method git-fetch)
(uri (git-reference
@@ -459,7 +499,7 @@ association studies (GWAS).")
(commit "7efdb8a2f7fdcd71c9ad9596be48d1262bb1bd5b")))
(sha256
(base32 "09icc2bjsg9y4hxjim4ql275izadf0kh1nnmapg8manyz6bc8svf"))
- (file-name "biod")))))
+ (file-name "biod-src")))))
(arguments
'(#:phases
(modify-phases %standard-phases