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-rw-r--r--gn/packages/ruby.scm69
1 files changed, 69 insertions, 0 deletions
diff --git a/gn/packages/ruby.scm b/gn/packages/ruby.scm
index 58ea35b..091d0a9 100644
--- a/gn/packages/ruby.scm
+++ b/gn/packages/ruby.scm
@@ -271,3 +271,72 @@ a history.")
(home-page
"http://docs.seattlerb.org/mechanize/")
(license expat)))
+
+
+(define-public ruby-bio-logger ; guix maybe ready
+(package
+ (name "ruby-bio-logger")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-logger" version))
+ (sha256
+ (base32
+ "02pylfy8nkdqzyzplvnhn1crzmfkj1zmi3qjhrj2f2imlxvycd28"))))
+ (build-system ruby-build-system)
+ (propagated-inputs `(("ruby-log4r" ,ruby-log4r)))
+ (arguments
+ `(#:tests? #f)) ;; no bundler
+ (synopsis "Log4r wrapper for BioRuby")
+ (description "Log4r wrapper for BioRuby")
+ (home-page
+ "https://github.com/pjotrp/bioruby-logger-plugin")
+ (license #f)))
+
+(define-public bio-table ; guix maybe ready
+(package
+ (name "bio-table")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-table" version))
+ (sha256
+ (base32
+ "1jlpls734kd41rffn2y2747nr14k5rwgaj2g3k48i9xgsfcmrn6r"))))
+ (build-system ruby-build-system)
+ (propagated-inputs
+ `(("ruby-bio-logger" ,ruby-bio-logger)))
+ (arguments
+ `(#:tests? #f)) ;; no bundler
+ (synopsis
+ "Functions and tools for tranforming and changing tab delimited and comma separated table files - useful for Excel sheets and SQL/RDF output")
+ (description
+ "Functions and tools for tranforming and changing tab delimited and comma separated table files - useful for Excel sheets and SQL/RDF output")
+ (home-page
+ "http://github.com/pjotrp/bioruby-table")
+ (license license:expat)))
+
+
+(define-public bio-vcf ; guix maybe ready
+(package
+ (name "bio-vcf")
+ (version "0.9.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-vcf" version))
+ (sha256
+ (base32
+ "1007bn0w8l11q867lxsyqnk0vgvv12skvk9gyglv7g44knr5vh4j"))))
+ (build-system ruby-build-system)
+ (arguments
+ `(#:tests? #f)) ;; no bundler/cucumber
+ (synopsis
+ "Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting (JSON, RDF etc.)")
+ (description
+ "Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting (JSON, RDF etc.)")
+ (home-page
+ "http://github.com/pjotrp/bioruby-vcf")
+ (license license:expat)))