diff options
Diffstat (limited to 'gn/packages/python.scm')
| -rw-r--r-- | gn/packages/python.scm | 453 |
1 files changed, 334 insertions, 119 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 651a635..ee32a61 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -30,6 +30,7 @@ #:use-module (gnu packages rdf) #:use-module (gnu packages readline) #:use-module (gnu packages statistics) + #:use-module (gnu packages tcl) #:use-module (gnu packages tex) #:use-module (gnu packages texinfo) #:use-module (gnu packages time) @@ -134,31 +135,75 @@ functions.") (license license:expat)) ) +(define-public python-plotly-3.2.1 + (package + (inherit python-plotly) + (name "python-plotly") + (version "3.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "plotly" version)) + (sha256 + (base32 + "1ay1plgsckfi7fddl99kvbcx5nifh48ahvszkqvb4d7r008m8sxk")))) + (build-system python-build-system) + (propagated-inputs + `(("python-decorator" ,python-decorator) + ("python-nbformat" ,python-nbformat) + ("python-pytz" ,python-pytz) + ("python-requests" ,python-requests) + ("python-retrying" ,python-retrying) + ("python-six" ,python-six))))) + +(define-public python-retrying + (package + (name "python-retrying") + (version "1.3.3") + (source + (origin + ;; pypi release doesn't have test library + (method git-fetch) + (uri (git-reference + (url "https://github.com/rholder/retrying") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1kqipkbdaw5s1xg0gi29awm03vp1x8dz24pjidgxagvkvrjpzhi7")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/rholder/retrying") + (synopsis "General-purpose retrying library") + (description "Retrying is a general-purpose retrying library, written in +Python, to simplify the task of adding retry behavior to just about anything. +The simplest use case is retrying a flaky function whenever an Exception occurs +until a value is returned.") + (license license:asl2.0))) + (define-public python-bagit; guix candidate -(package - (name "python-bagit") - (version "1.7.0") - (source - (origin - (method url-fetch) - (uri "https://files.pythonhosted.org/packages/ee/11/7a7fa81c0d43fb4d449d418eba57fc6c77959754c5c2259a215152810555/bagit-1.7.0.tar.gz") - (sha256 - (base32 + (package + (name "python-bagit") + (version "1.7.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "bagit" version)) + (sha256 + (base32 "1m6y04qmig0b5hzb35lnaw3d2yfydb7alyr1579yblvgs3da6j7j")))) - (build-system python-build-system) - (inputs + (build-system python-build-system) + (inputs `(("python-setuptools-scm" ,python-setuptools-scm) - ("python-coverage" ,python-coverage) - ("python-mock" ,python-mock) - )) - (arguments `(#:tests? #f)) ;; No tests. - (home-page "https://pypi.python.org/pypi/bagit") - (synopsis - "Python bagit.") - (description - "Python bagit.") - (license license:gpl2)) -) + ("python-coverage" ,python-coverage) + ("python-mock" ,python-mock))) + (arguments `(#:tests? #f)) ;; No tests. + (home-page "https://pypi.python.org/pypi/bagit") + (synopsis "Create and validate BagIt packages") + (description + "Create and validate BagIt packages") + (license license:gpl2))) (define-public python-prov ; guix candidate (package @@ -188,44 +233,43 @@ functions.") (license license:expat))) (define-public python-typing-extensions; guix candidate -(package - (name "python-typing-extensions") - (version "3.6.6") - (source - (origin - (method url-fetch) - (uri "https://files.pythonhosted.org/packages/fc/e6/3d2f306b12f01bde2861d67458d32c673e206d6fcc255537bf452db8f80c/typing_extensions-3.6.6.tar.gz") - (sha256 - (base32 + (package + (name "python-typing-extensions") + (version "3.6.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "typing_extensions" version)) + (sha256 + (base32 "07vhddjnd3mhdijyc3s0mwi9jgfjp3rr056nxqiavydbvkrvgrsi")))) - (build-system python-build-system) - (home-page "https://pypi.python.org/pypi/typing_extensions") - (synopsis - "Python typing_extensions.") - (description - "Python typing_extensions.") - (license license:gpl2)) + (build-system python-build-system) + (home-page "https://pypi.python.org/pypi/typing_extensions") + (synopsis "Python typing_extensions.") + (description + "Python typing_extensions.") + (license license:gpl2)) ) (define-public python-subprocess32 ; guix candidate -(package - (name "python-subprocess32") - (version "0.2.9") - (source - (origin - (method url-fetch) - (uri "https://files.pythonhosted.org/packages/be/2b/beeba583e9877e64db10b52a96915afc0feabf7144dcbf2a0d0ea68bf73d/subprocess32-3.5.3.tar.gz") - (sha256 - (base32 + (package + (name "python-subprocess32") + (version "3.5.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "subprocess32" version)) + (sha256 + (base32 "1hr5fan8i719hmlmz73hf8rhq74014w07d8ryg7krvvf6692kj3b")))) - (build-system python-build-system) - (arguments `(#:tests? #f)) ;; No tests. - (home-page "https://pypi.python.org/pypi/subprocess32") - (synopsis - "Python subprocess32.") - (description - "Python subprocess32.") - (license license:gpl2)) + (build-system python-build-system) + (arguments `(#:tests? #f)) ;; No tests. + (home-page "https://pypi.python.org/pypi/subprocess32") + (synopsis + "Python subprocess32.") + (description + "Python subprocess32.") + (license license:gpl2)) ) (define-public python-inotify ; guix candidate @@ -447,30 +491,25 @@ Python 3 support.") (package-with-python2 python-avro)) (define-public python-shellescape ; guix ready -(package - (name "python-shellescape") - (version "3.4.1") - (source - (origin - (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/s/shellescape/shellescape-" - version - ".tar.gz")) - (sha256 - (base32 + (package + (name "python-shellescape") + (version "3.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "shellescape" version)) + (sha256 + (base32 "0n5ky1b2vw2y0d4xl3qybyp2rk0gq5frjs8nr8ak6mgj2fyb4676")))) - (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) - (home-page - "https://github.com/chrissimpkins/shellescape") - (synopsis - "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") - (description - "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") - (license expat)) -) + (build-system python-build-system) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "https://github.com/chrissimpkins/shellescape") + (synopsis + "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") + (description + "Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)") + (license license:expat))) (define-public python2-shellescape (package-with-python2 python-shellescape)) @@ -533,59 +572,68 @@ project)") (define-public python2-pil1 ; guix obsolete (package (name "python2-pil1") - (version "1.1.6") + (version "1.1.7") (source (origin (method url-fetch) - (uri (string-append - "http://files.genenetwork.org/software/contrib/Imaging-" - version "-gn.tar.gz")) + (uri (string-append "http://effbot.org/downloads/Imaging-" + version ".tar.gz")) (sha256 (base32 - "0jhinbcq2k899c76m1jc5a3z39k6ajghiavpzi6991hbg6xhxdzg")) + "04aj80jhfbmxqzvmq40zfi4z3cw6vi01m3wkk6diz3lc971cfnw9")) (modules '((guix build utils))) (snippet - ;; Adapt to newer freetype. As the package is unmaintained upstream, - ;; there is no use in creating a patch and reporting it. - '(substitute* "_imagingft.c" - (("freetype/") - "freetype2/freetype/"))))) + ;; Adapt to newer freetype and lcms. As the package is unmaintained + ;; upstream, there is no use in creating a patch and reporting it. + '(begin (substitute* "_imagingft.c" + (("freetype/") + "freetype2/freetype/")) + (substitute* '("setup.py" + "_imagingcms.c") + (("lcms.h") "lcms2.h")))))) (build-system python-build-system) (inputs - `(("freetype" ,freetype) - ("libjpeg" ,libjpeg) - ("libtiff" ,libtiff) - ("python2-setuptools" ,python2-setuptools) - ("zlib" ,zlib))) + `(("freetype" ,freetype) + ("lcms" ,lcms) ; not fully supported + ("libjpeg" ,libjpeg) + ("libtiff" ,libtiff) + ("tcl" ,tcl) + ("zlib" ,zlib))) (arguments ;; Only the fork python-pillow works with Python 3. `(#:python ,python-2 #:tests? #f ; no check target + #:use-setuptools? #f #:phases - (alist-cons-before - 'build 'configure - ;; According to README and setup.py, manual configuration is - ;; the preferred way of "searching" for inputs. - ;; lcms is not found, TCL_ROOT refers to the unavailable tkinter. - (lambda* (#:key inputs #:allow-other-keys) - (let ((jpeg (assoc-ref inputs "libjpeg")) - (zlib (assoc-ref inputs "zlib")) - (tiff (assoc-ref inputs "libtiff")) - (freetype (assoc-ref inputs "freetype"))) - (substitute* "setup.py" - (("JPEG_ROOT = None") - (string-append "JPEG_ROOT = libinclude(\"" jpeg "\")")) - (("ZLIB_ROOT = None") - (string-append "ZLIB_ROOT = libinclude(\"" zlib "\")")) - (("TIFF_ROOT = None") - (string-append "TIFF_ROOT = libinclude(\"" tiff "\")")) - (("FREETYPE_ROOT = None") - (string-append "FREETYPE_ROOT = libinclude(\"" - freetype "\")"))))) - %standard-phases))) + (modify-phases %standard-phases + (add-after 'unpack 'link-libraries + (lambda* (#:key inputs #:allow-other-keys) + (let ((freetype (assoc-ref inputs "freetype")) + (jpeg (assoc-ref inputs "libjpeg")) + (lcms (assoc-ref inputs "lcms")) + (tcl (assoc-ref inputs "tcl")) + (tiff (assoc-ref inputs "libtiff")) + (zlib (assoc-ref inputs "zlib"))) + (substitute* "setup.py" + (("FREETYPE_ROOT .*") + (string-append "FREETYPE_ROOT = libinclude(\"" freetype "\")\n")) + (("JPEG_ROOT .*") + (string-append "JPEG_ROOT = libinclude(\"" jpeg "\")\n")) + (("LCMS_ROOT .*") + (string-append "LCMS_ROOT = libinclude(\"" lcms "\")\n")) + (("^TCL_ROOT .*") + (string-append "TCL_ROOT = libinclude(\"" tcl "\")\n")) + (("TIFF_ROOT .*") + (string-append "TIFF_ROOT = libinclude(\"" tiff "\")\n")) + (("ZLIB_ROOT .*") + (string-append "ZLIB_ROOT = libinclude(\"" zlib "\")\n")))) + #t))))) (home-page "http://www.pythonware.com/products/pil/") (synopsis "Python Imaging Library") - (description "The Python Imaging Library (PIL) adds image processing -capabilities to the Python interpreter.") + (description "The @dfn{Python Imaging Library} (PIL) adds image processing +capabilities to your Python interpreter. This library supports many file +formats, and provides powerful image processing and graphics capabilities. + +NOTE: This package is superseded by python-pillow") (license (license:x11-style "file://README" "See 'README' in the distribution.")))) @@ -618,6 +666,34 @@ version ".tgz")) (description #f) (license #f))) +(define-public python2-piddle-1.0.15 + (package + (name "python2-piddle") + (version "1.0.15") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/piddle/piddle/" + version "/piddle-" version ".zip")) + (sha256 + (base32 + "0jaxfsrcgqb5cf2wznxnpdws5khlrdixmg85lrhq2zl9cy6dfdya")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:use-setuptools? #f + #:tests? #f)) ; tests are interactive + (native-inputs + `(("unzip" ,unzip))) + (propagated-inputs + `(("python2-pil" ,python2-pil1))) + (home-page "http://www.strout.net/info/coding/python/piddle/") + (synopsis "Plug-In Drawing, Does Little Else") + (description "PIDDLE is designed for vector graphics -- i.e., drawing of +primitives such as lines and ellipses, rather than manipulation of individual +pixels.") + (license license:gpl2+))) + (define-public python2-parallel ; guix fix number of things (package (name "python2-parallel") @@ -695,7 +771,7 @@ the older versions.") (define-public python-htmlgen (package (name "python-htmlgen") - (version "1.0.0") + (version "1.2.2") (source (origin (method url-fetch) @@ -704,8 +780,10 @@ the older versions.") version ".tar.gz")) (sha256 (base32 - "1rwgqxhmc93l60wf4ay7ph619710kvyp73s22i0snjpm5i0bhc46")))) + "0w3pcvm68jfdhnsxwwwifwhqqj9kqg3195b52hqd23qza480xilx")))) (build-system python-build-system) + (propagated-inputs + `(("python-typing" ,python-typing))) (arguments `(#:tests? #f)) (synopsis "Python HTML 5 Generator") @@ -713,6 +791,9 @@ the older versions.") (home-page "https://github.com/srittau/python-htmlgen") (license license:expat))) +(define-public python2-htmlgen + (package-with-python2 python-htmlgen)) + (define-public python-version (let ((commit "e5aadc720bb74c535f29e5a2de5cd9697efe8d7c")) (package @@ -730,7 +811,6 @@ the older versions.") (base32 "1rc8kf72v180qlygkh1y0jwv2fxqpx7n97bqfhbwgnn31iwai9g3")))) (build-system python-build-system) - (build-system python-build-system) (propagated-inputs `( ("python-more-itertools" ,python-more-itertools) @@ -784,3 +864,138 @@ the older versions.") "arcp (Archive and Package) URI parser and generator") (license license:asl2.0)) ) + +(define-public python2-pp + (package + (name "python2-pp") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (string-append + "http://www.parallelpython.com/downloads/pp/pp-" version ".zip")) + (sha256 + (base32 + "0qkxcyclz3vgwpl6xvsrg76q59dj0wwy8qx15567bafv659ypyb1")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:use-setuptools? #f + #:tests? #f)) ; no tests + (native-inputs + `(("unzip" ,unzip))) + (home-page "http://www.parallelpython.com") + (synopsis "Parallel and distributed programming for Python") + (description "PP is a python module which provides mechanism for parallel +execution of python code on SMP (systems with multiple processors or cores) and +clusters (computers connected via network).") + (license license:bsd-3))) + +(define GN1-thirdparty-sources + (origin + (method url-fetch/tarbomb) + ;; ipfs get QmTPwYT2pehdxdG1TiHEzVzLgbeuhJ4utXShuz3twA84AB + (uri "file:///gnu/store/p33a2sh3x2nhiiphdw9nly80njg6p8fi-thirdparty.tgz") + (file-name "GN1-thirdparty") + (sha256 + (base32 + "0nnp6g412hjfrcn3k2yrfb14sxv06k0149whc7qmv678nyj5zhfa")))) + +(define-public python2-json-GN1 + (package + (name "python2-json-GN1") + (version "GN1") + (source GN1-thirdparty-sources) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (delete 'build) + (delete 'check) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (sitedir (string-append out "/lib/python2.7/site-packages/json/"))) + (mkdir-p sitedir) + (copy-recursively "thirdparty/json" sitedir) + #t)))))) + (home-page "") + (synopsis "") + (description "") + (license license:lgpl2.1+))) + +(define-public python2-pyx-GN1 + (package + (name "python2-pyx-GN1") + (version "0.8") + (source GN1-thirdparty-sources) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (delete 'build) + (delete 'check) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (sitedir (string-append out "/lib/python2.7/site-packages/pyx/"))) + (mkdir-p sitedir) + (copy-recursively "thirdparty/pyx" sitedir) + #t)))))) + (home-page "") + (synopsis "") + (description "") + (license license:gpl2+))) + +(define-public python2-pyxlwriter + (package + (name "python2-pyxlwriter") + (version "0.4a3") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/pyxlwriter/pyxlwriter/" + version "/pyXLWriter-" version ".zip")) + (sha256 + (base32 + "1kfsi6la9y53rwayszgayfmkjfknpp650v69a0hwd1fcfk1df735")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:use-setuptools? #f + #:tests? #f)) ; no tests + (native-inputs + `(("unzip" ,unzip))) + (home-page "https://sourceforge.net/projects/pyxlwriter/") + (synopsis "Python library for generating Excel compatible spreadsheets") + (description "PyXLWriter is a Python library for generating Excel compatible +spreadsheets. It's a port of John McNamara's Perl @code{Spreadsheet::WriteExcel} +module version 1.01 to Python. It allows writing of Excel compatible +spreadsheets without the need for COM objects.") + (license license:lgpl2.1+))) + +(define-public python2-svg-GN1 + (package + (name "python2-svg-GN1") + (version "1.0") + (source GN1-thirdparty-sources) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (delete 'build) + (delete 'check) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (sitedir (string-append out "/lib/python2.7/site-packages/svg/"))) + (mkdir-p sitedir) + (copy-recursively "thirdparty/svg" sitedir) + #t)))))) + (home-page "") + (synopsis "") + (description "") + (license license:bsd-4))) |