diff options
Diffstat (limited to 'gn/packages/python.scm')
| -rw-r--r-- | gn/packages/python.scm | 193 |
1 files changed, 141 insertions, 52 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 60558a2..7e4786f 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -3,6 +3,7 @@ #:use-module (gnu packages) #:use-module (gnu packages attr) #:use-module (gnu packages base) + #:use-module (gnu packages bioinformatics) #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages databases) @@ -30,6 +31,7 @@ #:use-module (gnu packages python-xyz) #:use-module (gnu packages rdf) #:use-module (gnu packages readline) + #:use-module (gnu packages serialization) #:use-module (gnu packages statistics) #:use-module (gnu packages tcl) #:use-module (gnu packages tex) @@ -228,25 +230,6 @@ until a value is returned.") "A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)") (license license:expat))) -(define-public python-typing-extensions; guix candidate - (package - (name "python-typing-extensions") - (version "3.6.6") - (source - (origin - (method url-fetch) - (uri (pypi-uri "typing_extensions" version)) - (sha256 - (base32 - "07vhddjnd3mhdijyc3s0mwi9jgfjp3rr056nxqiavydbvkrvgrsi")))) - (build-system python-build-system) - (home-page "https://pypi.python.org/pypi/typing_extensions") - (synopsis "Python typing_extensions.") - (description - "Python typing_extensions.") - (license license:gpl2)) -) - (define-public python-subprocess32 ; guix candidate (package (name "python-subprocess32") @@ -322,39 +305,6 @@ until a value is returned.") (define-public python2-xlsxwriter (package-with-python2 python-xlsxwriter)) -(define-public python-rdflib-jsonld ; guix ready - (package - (name "python-rdflib-jsonld") - (version "0.4.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "rdflib-jsonld" version)) - (sha256 - (base32 - "0bdw2pbjmpy1l4p6slsjn54bqy6crk5hk4san84xxirgd9w78iql")))) - (build-system python-build-system) - (inputs - `(("python-setuptools" ,python-setuptools))) - (propagated-inputs - `(("python-rdflib" ,python-rdflib) - ("python-isodate" ,python-isodate) - ("python-pyparsing" ,python-pyparsing) - ("python-html5lib" ,python-html5lib) - ("python-nose" ,python-nose) -)) - (home-page - "https://github.com/RDFLib/rdflib-jsonld") - (synopsis - "rdflib extension adding JSON-LD parser and serializer") - (description - "rdflib extension adding JSON-LD parser and serializer") - (license license:bsd-3))) - -(define-public python2-rdflib-jsonld - (package-with-python2 python-rdflib-jsonld)) - - (define-public python-rserve (package (name "python-rserve") @@ -1094,3 +1044,142 @@ spreadsheets without the need for COM objects.") (synopsis "") (description "") (license license:bsd-4))) + +(define-public python-admiral + (package + (name "python-admiral") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "admiral" version)) + (sha256 + (base32 + "1b2zjgyz94ld5wr7s4cm4x5sxijx3w0dmd7r2cq1s8iqjzz6rd1x")))) + (build-system python-build-system) + (arguments '(#:tests? #f)) ; No tests + (propagated-inputs + `(("python-humanfriendly" ,python-humanfriendly))) + (home-page "https://github.com/nspies/admiral") + (synopsis + "Simple python high-performance computing cluster batch submission") + (description + "Simple python high-performance computing cluster batch submission.") + (license #f))) ; No license in repository. + +(define-public python2-admiral + (package-with-python2 python-admiral)) + +(define-public python-cachecontrol-0.11 + (package + (inherit python-cachecontrol) + (name "python-cachecontrol") + (version "0.11.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "CacheControl" version)) + (sha256 + (base32 + "07jsfhlbcwgqg6ayz8nznzaqg5rmxqblbzxz1qvg5wc44pcjjy4g")))))) + +(define-public python-ruamel.yaml-0.15 + (package + (inherit python-ruamel.yaml) + (name "python-ruamel.yaml") + (version "0.15.77") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ruamel.yaml" version)) + (sha256 + (base32 + "1mhzxkkiv3xmr9izrgk78x7f1r5gi8kd5ac7z3vn7j00q1ydn6da")))))) + +(define-public python-pbr-1.6.0 + (package + (inherit python-pbr) + (name "python-pbr") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pbr" version)) + (sha256 + (base32 + "1lg1klrczvzfan89y3bl9ykrknl3nb01vvai37fkww24apzyibjf")))))) + +(define-public python-arvados-python-client + (package + (name "python-arvados-python-client") + (version "2.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "arvados-python-client" version)) + (sha256 + (base32 + "19l4w6m5426x5k2kick630dh2jx26j16ycs2nhbfgr4cd43d29y4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; tests not included? + (propagated-inputs + `(("python-ciso8601" ,python-ciso8601) + ("python-future" ,python-future) + ;("python-google-api-python-client" ,python-google-api-python-client) + ("python-google-api-client" ,python-google-api-client) + ("python-httplib2" ,python-httplib2) + ("python-pycurl" ,python-pycurl) + ("python-ruamel.yaml" ,python-ruamel.yaml-0.15) + ("python-setuptools" ,python-setuptools) + ("python-ws4py" ,python-ws4py))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-oauth2client" ,python-oauth2client) + ("python-pbr" ,python-pbr-1.6.0) + ("python-pyyaml" ,python-pyyaml) + ("python-uritemplate" ,python-uritemplate))) + (home-page "https://arvados.org") + (synopsis "Arvados client library") + (description "This package provides the arvados module, an API client for +Arvados. It also includes higher-level functions to help you write Crunch +scripts, and command-line tools to store and retrieve data in the Keep storage +server.") + (license license:asl2.0))) + +(define-public python-schema-salad + (package + (name "python-schema-salad") + (version "5.0.20200416112825") + (source + (origin + (method url-fetch) + (uri (pypi-uri "schema-salad" version)) + (sha256 + (base32 + "1pm6q266qrw4r0w0vnzhsvqgk5j8b3q61hxg99awhgpjsmcvkmsz")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cachecontrol" ,python-cachecontrol-0.11) + ("python-lockfile" ,python-lockfile) + ("python-mistune" ,python-mistune) + ("python-rdflib" ,python-rdflib) + ("python-rdflib-jsonld" ,python-rdflib-jsonld) + ("python-requests" ,python-requests) + ("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-setuptools" ,python-setuptools) + ("python-typing-extensions" ,python-typing-extensions))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/common-workflow-language/schema_salad") + (synopsis "Schema Annotations for Linked Avro Data (SALAD)") + (description + "Salad is a schema language for describing JSON or YAML structured linked +data documents. Salad schema describes rules for preprocessing, structural +validation, and hyperlink checking for documents described by a Salad schema. +Salad supports rich data modeling with inheritance, template specialization, +object identifiers, object references, documentation generation, code +generation, and transformation to RDF. Salad provides a bridge between document +and record oriented data modeling and the Semantic Web.") + (license license:asl2.0))) |