diff options
Diffstat (limited to 'gn/packages/phewas.scm')
| -rw-r--r-- | gn/packages/phewas.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gn/packages/phewas.scm b/gn/packages/phewas.scm index 7dadb04..50b5ed4 100644 --- a/gn/packages/phewas.scm +++ b/gn/packages/phewas.scm @@ -11,6 +11,7 @@ #:use-module (guix build-system ruby) #:use-module (guix build-system r) #:use-module (guix build-system trivial) + #:use-module (gn packages lmm) #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages base) @@ -41,6 +42,31 @@ #:use-module (gnu packages bootstrap) #:use-module (srfi srfi-1)) +(define-public r-mlmm + (let ((commit "9fec9805573e97b44ee121f3651ddb79eafc8f8d")) + (package + (name "r-mlmm") + (version "0.1.0") + (source (origin + ;; We use the git reference, because there's no CRAN package (yet) + (method git-fetch) + (uri (git-reference + (url "https://github.com/Gregor-Mendel-Institute/mlmm.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7) "-checkout" )) + (sha256 + (base32 + "0dr77bf6i7qpi6kvay84p4lgib20l552ph8mp56v3qk0fbsamh8j")))) + (build-system r-build-system) + (propagated-inputs + `(("r-emma" ,r-emma))) + (synopsis "R/mlmm") + (description + "Implements an efficient multi-locus mixed-model approach for +genome-wide association studies in structured populations.") + (home-page "https://github.com/Gregor-Mendel-Institute/mlmm") + (license license:gpl3)))) + (define-public r-fastmatch (package (name "r-fastmatch") @@ -118,8 +144,10 @@ `( ("r" ,r) ("r-data-table" ,r-data-table) + ; ("r-emma" ,r-emma) ("r-fgsea" ,r-fgsea) ("r-limma" ,r-limma) + ("r-mlmm" ,r-mlmm) ("r-qvalue" ,r-qvalue) )) (arguments |