diff options
Diffstat (limited to 'gn/packages/phewas.scm')
| -rw-r--r-- | gn/packages/phewas.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gn/packages/phewas.scm b/gn/packages/phewas.scm index 50b5ed4..f9643af 100644 --- a/gn/packages/phewas.scm +++ b/gn/packages/phewas.scm @@ -42,6 +42,37 @@ #:use-module (gnu packages bootstrap) #:use-module (srfi srfi-1)) +(define-public r-intermediate + (let ((commit "1e4ec77a92889f7548da766cb28abab18df952dc")) + (package + (name "r-intermediate") + (version "0.2-4") + (source (origin + ;; We use the git reference, because there's no CRAN package (yet) + (method git-fetch) + (uri (git-reference + (url "https://github.com/simecek/intermediate.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7) "-checkout" )) + (sha256 + (base32 + "0l7acxmizw8az37365z4gr9wc6ny9d4zx3q42dgvp04yyzwafbr8")))) + (build-system r-build-system) + ; (propagated-inputs + ; `(("r-emma" ,r-emma))) + (inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-magrittr" ,r-magrittr) + ("r-plotly" ,r-plotly) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-testthat" ,r-testthat))) + (synopsis "R/intermediate") + (description + "R package for eQTl/pQTL mediation analysis.") + (home-page "https://github.com/simecek/intermediate") + (license license:gpl3)))) + + (define-public r-mlmm (let ((commit "9fec9805573e97b44ee121f3651ddb79eafc8f8d")) (package @@ -146,6 +177,7 @@ genome-wide association studies in structured populations.") ("r-data-table" ,r-data-table) ; ("r-emma" ,r-emma) ("r-fgsea" ,r-fgsea) + ("r-intermediate" ,r-intermediate) ("r-limma" ,r-limma) ("r-mlmm" ,r-mlmm) ("r-qvalue" ,r-qvalue) |