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+;; Bioinformatics module
+
+(define-module (gn packages pangenome)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system cargo)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix graph)
+ #:use-module (guix scripts graph)
+ #:use-module (guix store)
+ #:use-module (guix gexp)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages crates-io)
+ #:use-module (gnu packages rust)
+ #:use-module (gnu packages version-control)
+ #:use-module (srfi srfi-1))
+
+
+(define-public gfautil
+ (package
+ (name "gfautil")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (crate-uri "gfautil" version))
+ (file-name
+ (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0cgiis9v1nd4m7zxvgsz8jf8ijv4d8fa5wb7cpnjshksb8z7xh69"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-bstr" ,rust-bstr-0.2)
+ ("rust-clap" ,rust-clap-2)
+ ("rust-gfa" ,rust-gfa-0.6)
+ ("rust-handlegraph" ,rust-handlegraph-0.3)
+ ("rust-rayon" ,rust-rayon-1)
+ ("rust-serde" ,rust-serde-1)
+ ("rust-structopt" ,rust-structopt-0.3))))
+ (home-page "https://github.com/chfi/rs-gfa-utils")
+ (synopsis "Command line tools for working with GFA files")
+ (description
+ "This package provides command line tools for working with @acronym{GFA,
+Graphical Fragment Assembly} files and related formats.")
+ (license license:expat)))