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-rw-r--r--gn/packages/genenetwork.scm4
1 files changed, 1 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 63d687c..0e0d02e 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -199,7 +199,7 @@ location of a putative QTL.")
("r-wgcna" ,r-wgcna)
("redis" ,redis)
("mysql" ,mysql)
- ("gemma" ,gemma-git)
+ ("gemma" ,gemma)
("genenetwork2-files-small" ,genenetwork2-files-small)
("plink-ng" ,plink-ng)
("pylmm-gn2" ,pylmm-gn2)
@@ -239,7 +239,6 @@ location of a putative QTL.")
(lambda* (#:key inputs #:allow-other-keys)
(let* (
(datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
- (twittercmd (string-append (assoc-ref inputs "javascript-twitter-post-fetcher") "/share/genenetwork2/javascript/Twitter-Post-Fetcher"))
(pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
(plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
(gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
@@ -247,7 +246,6 @@ location of a putative QTL.")
(substitute* '("etc/default_settings.py")
(("^GENENETWORK_FILES =.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" ))
- (("^TWITTER_POST_FETCHER_JS_PATH =.*") (string-append "TWITTER_POST_FETCHER_JS_PATH = \"" twittercmd "\"\n" ))
(("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" ))
(("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" ))
(("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" ))