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-rw-r--r--gn/packages/genenetwork.scm6
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 81873d5..a7317c6 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -163,8 +163,8 @@
("mysql" ,mysql)
("gemma" ,gemma-git)
("genenetwork2-files-small" ,genenetwork2-files-small)
+ ("plink-ng" ,plink-ng)
("pylmm-gn2" ,pylmm-gn2)
- ;; ("plink2" ,plink-ng) disabled - FIXME
("nginx" ,nginx)
("python2-flask" ,python2-flask)
("python2-htmlgen-gn" ,python2-htmlgen-gn)
@@ -200,14 +200,14 @@
(let* (
(datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
(pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
- ;; (plink2cmd (string-append (assoc-ref inputs "plink2") "/bin/plink2"))
+ (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
(gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
)
(substitute* '("etc/default_settings.py")
(("^GENENETWORK_FILES =.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" ))
(("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" ))
- ;; (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" ))
+ (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" ))
(("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" ))
)
))))