diff options
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 4450bfa..8c28a85 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -240,7 +240,6 @@ location of a putative QTL.") ("gemma-wrapper" ,gemma-wrapper) ("genenetwork2-files-small" ,genenetwork2-files-small) ("plink-ng-gn" ,plink-ng-gn) - ("pylmm-gn2" ,pylmm-gn2) ("nginx" ,nginx) ("python2-flask" ,python2-flask) ("gunicorn" ,gunicorn) @@ -265,7 +264,8 @@ location of a putative QTL.") ;; ("python2-piddle-gn" ,python2-piddle-gn) ("python2-redis" ,python2-redis) ("python2-requests" ,python2-requests) - ; ("python2-pil1" ,python2-pil1) ; should move to pillow some day + ; ("python2-pil1" ,python2-pil1) ; merged to pillow (https://github.com/genenetwork/genenetwork2/pull/355) + ("python2-pillow" ,python2-pillow) ("python2-requests" ,python2-requests) ("python2-rpy2" ,python2-rpy2) ("python2-scipy" ,python2-scipy) @@ -306,14 +306,14 @@ location of a putative QTL.") (lambda* (#:key inputs #:allow-other-keys) (let* ( (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) - (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) + ; (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) ) (substitute* '("etc/default_settings.py") (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) - (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) + ; (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) (("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" )) ) |