diff options
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index df18955..63d687c 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -45,6 +45,7 @@ #:use-module (gnu packages bootstrap) #:use-module (gn packages bioinformatics) #:use-module (gn packages gemma) + #:use-module (gn packages javascript) #:use-module (gn packages phewas) #:use-module (gn packages python) #:use-module (gn packages statistics) @@ -226,6 +227,7 @@ location of a putative QTL.") ("python2-pyyaml" ,python2-pyyaml) ("python2-xlsxwriter" ,python2-xlsxwriter) ("qtlreaper" ,qtlreaper) + ("javascript-twitter-post-fetcher" ,javascript-twitter-post-fetcher) )) (build-system python-build-system) (arguments @@ -237,6 +239,7 @@ location of a putative QTL.") (lambda* (#:key inputs #:allow-other-keys) (let* ( (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) + (twittercmd (string-append (assoc-ref inputs "javascript-twitter-post-fetcher") "/share/genenetwork2/javascript/Twitter-Post-Fetcher")) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) @@ -244,6 +247,7 @@ location of a putative QTL.") (substitute* '("etc/default_settings.py") (("^GENENETWORK_FILES =.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) + (("^TWITTER_POST_FETCHER_JS_PATH =.*") (string-append "TWITTER_POST_FETCHER_JS_PATH = \"" twittercmd "\"\n" )) (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) (("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" )) |