diff options
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 161 |
1 files changed, 81 insertions, 80 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index d89852d..d05d9f5 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -133,17 +133,14 @@ (list python-hypothesis python-mypy python-mypy-extensions - python-pylint - python-pytest - python-pytest-mock)) + python-pylint)) (propagated-inputs - (list gemma-wrapper - python-wrapper - csvdiff + (list csvdiff diffutils + gemma-wrapper gn-rust-correlation - python-authlib python-argon2-cffi + python-authlib python-bcrypt ;; Replace use of bcrypt with argon python-biopython python-email-validator @@ -157,11 +154,14 @@ python-plotly python-pyld python-pymonad + python-pytest + python-pytest-mock python-redis python-requests python-scikit-learn python-scipy python-sparqlwrapper + python-wrapper python-xapian-bindings r r-ctl @@ -203,103 +203,104 @@ (list graphviz)) (propagated-inputs (list genenetwork3 - parallel coreutils - git - which - grep - r - r-ctl - r-qtl - r-wgcna - redis - mariadb gemma gemma-wrapper - plink-ng-gn - rust-qtlreaper - gn-rust-correlation + git glibc-utf8-locales - nginx - python-wrapper - python-pillow - python-coverage - python-configparser - python-flask + gn-rust-correlation + grep gunicorn + javascript-bootstrap + javascript-chroma + javascript-ckeditor + javascript-colorbox + javascript-cytoscape + javascript-cytoscape-panzoom + javascript-cytoscape-qtip + javascript-d3-tip + javascript-d3js + javascript-datatables + javascript-datatables-buttons + javascript-datatables-buttons-bootstrap + javascript-datatables-buttons-styles + javascript-datatables-col-reorder + javascript-datatables-col-resize + javascript-datatables-plugins + javascript-datatables-scroller + javascript-font-awesome + javascript-htmx + javascript-jquery + javascript-jquery-cookie + javascript-jquery-ui + javascript-jscolor + javascript-jszip + javascript-linkify + javascript-linkify-html + javascript-nouislider + javascript-nvd3 + javascript-plotly + javascript-purescript-genome-browser + javascript-qtip2 + javascript-shapiro-wilk + javascript-twitter-post-fetcher + javascript-typeahead + javascript-uikit + javascript-underscore-string + javascript-zxcvbn + js-jstat + js-md5 + js-parsley + js-smart-time-ago + js-underscore + mariadb + nginx + parallel + plink-ng-gn + python-authlib python-autopep8 + python-beautifulsoup4 + python-configparser + python-coverage python-cssselect + python-flask python-flask-debugtoolbar + python-flask-session python-htmlgen python-ijson python-jinja2 - python-pytest - python-pytest-mock - python-sqlalchemy - python-setuptools - python-scipy python-lxml - python-mysqlclient + python-markdown python-mypy + python-mysqlclient python-numpy python-pandas + python-pillow python-pylint python-pymonad + python-pytest + python-pytest-mock + python-rdflib python-redis python-requests - python-simplejson - python-markdown - python-rdflib - python-authlib - python-flask-session python-rpy2 - python-beautifulsoup4 + python-scipy + python-setuptools + python-simplejson + python-sqlalchemy + python-wrapper python-xlsxwriter - javascript-twitter-post-fetcher - javascript-cytoscape - javascript-cytoscape-panzoom - javascript-cytoscape-qtip - javascript-chroma - javascript-d3-tip - javascript-jscolor - javascript-colorbox - javascript-jszip - js-jstat - js-md5 - js-parsley - javascript-plotly - javascript-typeahead - js-underscore - javascript-uikit - js-smart-time-ago - javascript-nouislider - javascript-purescript-genome-browser - javascript-ckeditor - javascript-datatables - javascript-datatables-scroller - javascript-datatables-buttons - javascript-datatables-buttons-bootstrap - javascript-datatables-plugins - javascript-datatables-col-reorder - javascript-datatables-col-resize - javascript-datatables-buttons-styles - javascript-shapiro-wilk - javascript-underscore-string - javascript-htmx - javascript-qtip2 - javascript-d3js - javascript-nvd3 - javascript-bootstrap - javascript-jquery - javascript-zxcvbn - javascript-jquery-ui - javascript-jquery-cookie - javascript-linkify - javascript-linkify-html + r + r-ctl + r-qtl + r-wgcna + redis + rust-qtlreaper + which ; javascript-xterm -- disabled until we know what to do with it, not working on production ; javascript-xterm-style ; javascript-xterm-addon-fit - javascript-font-awesome)) + )) (inputs (list javascript-colorbox)) (build-system python-build-system) |