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-rw-r--r--gn/packages/genenetwork.scm6
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index b55c37f..ea7fcd6 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -44,7 +44,7 @@
#:use-module (gnu packages bootstrap)
#:use-module (gnu packages version-control)
#:use-module (gn packages bioinformatics)
- ; #:use-module (gn packages gemma)
+ #:use-module (gn packages gemma)
#:use-module (gn packages javascript)
#:use-module (gn packages phewas)
#:use-module (gn packages python)
@@ -175,7 +175,7 @@ location of a putative QTL.")
("r-wgcna" ,r-wgcna)
("redis" ,redis)
("mysql" ,mysql)
- ("gemma" ,gemma)
+ ("gemma-git-gn2" ,gemma-git-gn2)
("genenetwork2-files-small" ,genenetwork2-files-small)
("plink-ng" ,plink-ng)
("pylmm-gn2" ,pylmm-gn2)
@@ -233,7 +233,7 @@ location of a putative QTL.")
(datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
(pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
(plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
- (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
+ (gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma"))
)
(substitute* '("etc/default_settings.py")