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-rw-r--r--gn/packages/gemma.scm18
1 files changed, 9 insertions, 9 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 67e8bf7..94433e2 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -61,7 +61,6 @@
#:use-module (gn packages shell)
#:use-module (srfi srfi-1))
-
(define-public gsl
(package
(name "gsl")
@@ -86,30 +85,30 @@ numbers.")
(license license:gpl3+)))
-(define-public gemma-git ; guix candidate
- (let ((commit "c91dfaef84d08ce151eecca50bf8ffdaf4b327f6"))
+(define-public gemma-git-gn2 ; guix candidate
+ (let ((commit "48da44bf2da05f76008b083923ddf5701b9c029a"))
(package
- (name "gemma-git")
- (version (string-append "0.97-pre-" (string-take commit 7)))
+ (name "gemma-git-gn2")
+ (version (string-append "0.97-gn2-" (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/genenetwork/GEMMA")
(commit commit)))
- (file-name (string-append name "-" commit))
+ (file-name (string-append name "-" version))
(sha256
(base32
- "1ix4p6av88i6jfv84v2qqcmdlnxznp64bm93avrrl68v04jq6psm"))))
+ "1bvf03aimk1nywv4z8dr75f2qi8mav346w787wzddckakn29yymb"))))
(inputs `(
("gsl" ,gsl)
("eigen" ,eigen)
+ ("shunit2" ,shunit2)
("lapack" ,lapack)
("openblas" ,openblas)
("zlib" ,zlib)
))
(native-inputs ; for running tests
`(("perl" ,perl)
- ("shunit2" ,shunit2)
("which" ,which)
))
@@ -121,6 +120,7 @@ numbers.")
(assoc-ref %build-inputs "eigen")
"/include/eigen3/")
"FORCE_DYNAMIC=1"
+ "DEBUG=1"
"WITH_OPENBLAS=1")
#:phases
; "/include/eigen3/"
@@ -143,7 +143,7 @@ mixed model and some of its close relatives for genome-wide
association studies (GWAS).")
(license license:gpl3))))
-(define-public gemma
+(define-public gemma-gn2
(package
(name "gemma")
(version "0.96")