diff options
Diffstat (limited to 'gn/packages/gemma.scm')
| -rw-r--r-- | gn/packages/gemma.scm | 18 |
1 files changed, 9 insertions, 9 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 67e8bf7..94433e2 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -61,7 +61,6 @@ #:use-module (gn packages shell) #:use-module (srfi srfi-1)) - (define-public gsl (package (name "gsl") @@ -86,30 +85,30 @@ numbers.") (license license:gpl3+))) -(define-public gemma-git ; guix candidate - (let ((commit "c91dfaef84d08ce151eecca50bf8ffdaf4b327f6")) +(define-public gemma-git-gn2 ; guix candidate + (let ((commit "48da44bf2da05f76008b083923ddf5701b9c029a")) (package - (name "gemma-git") - (version (string-append "0.97-pre-" (string-take commit 7))) + (name "gemma-git-gn2") + (version (string-append "0.97-gn2-" (string-take commit 7))) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/genenetwork/GEMMA") (commit commit))) - (file-name (string-append name "-" commit)) + (file-name (string-append name "-" version)) (sha256 (base32 - "1ix4p6av88i6jfv84v2qqcmdlnxznp64bm93avrrl68v04jq6psm")))) + "1bvf03aimk1nywv4z8dr75f2qi8mav346w787wzddckakn29yymb")))) (inputs `( ("gsl" ,gsl) ("eigen" ,eigen) + ("shunit2" ,shunit2) ("lapack" ,lapack) ("openblas" ,openblas) ("zlib" ,zlib) )) (native-inputs ; for running tests `(("perl" ,perl) - ("shunit2" ,shunit2) ("which" ,which) )) @@ -121,6 +120,7 @@ numbers.") (assoc-ref %build-inputs "eigen") "/include/eigen3/") "FORCE_DYNAMIC=1" + "DEBUG=1" "WITH_OPENBLAS=1") #:phases ; "/include/eigen3/" @@ -143,7 +143,7 @@ mixed model and some of its close relatives for genome-wide association studies (GWAS).") (license license:gpl3)))) -(define-public gemma +(define-public gemma-gn2 (package (name "gemma") (version "0.96") |