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-rw-r--r--gn/packages/cwl.scm26
1 files changed, 15 insertions, 11 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
index 4f04f41..6980bb8 100644
--- a/gn/packages/cwl.scm
+++ b/gn/packages/cwl.scm
@@ -3,6 +3,7 @@
(define-module (gn packages cwl)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
+ #:use-module (gnu packages check)
#:use-module (gnu packages python)
#:use-module (gnu packages python-web)
#:use-module (gnu packages rdf)
@@ -19,7 +20,7 @@
(define-public python-cwltool ; guix: needs work
(package
(name "python-cwltool")
- (version "1.0.20150916041152")
+ (version "1.0.20181012180214")
(source
(origin
(method url-fetch)
@@ -29,17 +30,23 @@
".tar.gz"))
(sha256
(base32
- "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
+ "0pk0jlac2vl6vfihdq07agzz9dasw84yjz5ladcbwnmzzl022cg7"))))
(build-system python-build-system)
(inputs
- `(("python-setuptools" ,python-setuptools)
+ `(("python-bagit" ,python-bagit)
+ ("python-setuptools" ,python-setuptools)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytest-runner" ,python-pytest-runner)
+ ("python-typing-extensions" ,python-typing-extensions)
+ ("python-prov" ,python-prov)
("python-pyparsing" ,python-pyparsing)
+ ("python-subprocess32" ,python-subprocess32)
))
(propagated-inputs
`(("python-schema-salad" ,python-schema-salad)
("python-html5lib" ,python-html5lib)
))
- (arguments `(#:tests? #f)) ;; CWL includes no tests.
+ ; (arguments `(#:tests? #f)) ;; CWL includes no tests.
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis
@@ -54,17 +61,14 @@
(define-public python-schema-salad
(package
(name "python-schema-salad")
- (version "1.0.2")
+ (version "3.0.20181129082112")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/s/schema-salad/schema-salad-"
- version
- ".tar.gz"))
+ (uri (pypi-uri "schema-salad" version))
(sha256
(base32
- "09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37"))))
+ "1xg70v82q053vz1sg8sc99alnkrm2kk05w6698vgmngl1767sk97"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ;; CWL includes no tests.
(inputs
@@ -73,7 +77,7 @@
("python-rdflib-jsonld" ,python-rdflib-jsonld)
("python-mistune" ,python-mistune)))
(propagated-inputs
- `(("python-rdflib-4.2" ,python-rdflib-4.2)
+ `(("python-rdflib" ,python-rdflib)
("python-avro" ,python-avro)
("python-pyyaml" ,python-pyyaml)
("python-requests" ,python-requests)