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-rw-r--r--gn/packages/cwl.scm22
1 files changed, 16 insertions, 6 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
index 9b75c2b..2642f90 100644
--- a/gn/packages/cwl.scm
+++ b/gn/packages/cwl.scm
@@ -7,6 +7,7 @@
#:use-module (gnu packages python)
#:use-module (gnu packages python-web)
#:use-module (gnu packages rdf)
+ #:use-module (gnu packages serialization)
#:use-module (gn packages python)
#:use-module (guix download)
#:use-module (guix packages)
@@ -17,9 +18,9 @@
; #:use-module (guix build-system trivial)
#:use-module (srfi srfi-1))
-(define-public python-cwltool ; guix: needs work
+(define-public cwltool ; guix: needs work
(package
- (name "python-cwltool")
+ (name "cwltool")
(version "1.0.20181012180214")
(source
(origin
@@ -36,18 +37,30 @@
`(("python-bagit" ,python-bagit)
("python-setuptools" ,python-setuptools)
("python-pytest-cov" ,python-pytest-cov)
+ ("python-prov" ,python-prov)
("python-pytest-runner" ,python-pytest-runner)
("python-rdflib" ,python-rdflib)
("python-typing-extensions" ,python-typing-extensions)
("python-pyparsing" ,python-pyparsing)
("python-subprocess32" ,python-subprocess32)
+ ("python-ruamel.yaml" ,python-ruamel.yaml)
+ ("python-cachecontrol" ,python-cachecontrol)
+ ("python-mypy-extensions" ,python-mypy-extensions)
))
(propagated-inputs
`(("python-schema-salad" ,python-schema-salad)
- ("python-prov" ,python-prov)
("python-html5lib" ,python-html5lib)
))
; (arguments `(#:tests? #f)) ;; CWL includes no tests.
+ (arguments
+ `(;#:phases
+ ; (modify-phases %standard-phases
+ ; (replace 'check
+ ; (lambda* (#:key inputs outputs #:allow-other-keys)
+ ; (invoke "python" "-m" "pytest")
+ ; )))
+ #:tests? #f)) ; Disable for now
+
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis
@@ -56,9 +69,6 @@
"Common workflow language reference implementation")
(license license:asl2.0)))
-(define-public python2-cwltool
- (package-with-python2 python-cwltool))
-
(define-public python-schema-salad
(package
(name "python-schema-salad")