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-rw-r--r--gn/packages/book_evolutionary_genomics.scm42
1 files changed, 2 insertions, 40 deletions
diff --git a/gn/packages/book_evolutionary_genomics.scm b/gn/packages/book_evolutionary_genomics.scm
index af4bf89..56b0572 100644
--- a/gn/packages/book_evolutionary_genomics.scm
+++ b/gn/packages/book_evolutionary_genomics.scm
@@ -10,7 +10,6 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
- ;; #:use-module (guix build-system ruby)
#:use-module (guix build-system r)
#:use-module (guix build-system trivial)
@@ -18,11 +17,7 @@
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages compression)
- ; #:use-module (gnu packages gcc)
- ; #:use-module (gnu packages graphviz)
- ; #:use-module (gnu packages java)
- ; #:use-module (gnu packages linux)
- ; #:use-module (gnu packages ldc)
+ #:use-module (gnu packages cran)
#:use-module (gnu packages libffi)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
@@ -30,14 +25,11 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages tls)
#:use-module (gnu packages vim)
- ; #:use-module (gnu packages web)
- ; #:use-module (gnu packages xml)
#:use-module (gnu packages version-control)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages javascript)
#:use-module (gn packages python)
- ; #:use-module (gn packages statistics)
#:use-module (srfi srfi-1))
(define-public r-gener ;; poor implementation
@@ -81,36 +73,6 @@
".")
(license license:expat))) ; CeCILL-2.0
-(define-public r-rserve
- (package
- (name "r-rserve")
- (version "1.8-4")
- (source
- (origin
- (method url-fetch)
- (uri "https://github.com/s-u/Rserve/releases/download/1.8-4/Rserve_1.8-4.tar.gz")
- (sha256
- (base32
- "1dncwiyhy1s1pimb6f2dzs3ivahah5id3chw4r10j92754bxmrn2"))))
- (propagated-inputs
- `(("r" ,r)))
- (inputs `(("zlib" ,zlib)
- ("openssl" ,openssl)))
-
- (build-system r-build-system)
- (home-page "https://github.com/s-u/Rserve")
- (synopsis "Fast, flexible and powerful server providing access to R from many languages and systems http://RForge.net/Rserve")
- (description
- "Rserve acts as a socket server (TCP/IP or local sockets) which
-allows binary requests to be sent to R. Every connection has a
-separate workspace and working directory. Client-side implementations
-are available for popular languages such as C/C++ and Java, allowing
-any application to use facilities of R without the need of linking to
-R code. Rserve supports remote connection, user authentication and
-file transfer. A simple R client is included in this package as
-well.")
- (license license:gpl2)))
-
(define-public book-evolutionary-genomics
(let ((commit "53a7aefefcedd52b94b38195f8daae94c07d89db"))
(package
@@ -131,7 +93,7 @@ well.")
(propagated-inputs
`(("python" ,python)
("python-biopython" ,python-biopython)
- ("python-rserve" ,python-rserve)
+ ; ("python-rserve" ,python-rserve)
("r" ,r)
("r-gener" ,r-gener)
("r-biostrings" ,r-biostrings)