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-rw-r--r--gn/packages/bioinformatics.scm12
1 files changed, 7 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 2ef727f..3f89abe 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1899,14 +1899,13 @@ The path-guided stochastic gradient descent based 1D sort implemented in
(define-public graphaligner
(package
(name "graphaligner")
- (version "1.0.19")
+ (version "1.0.20")
(source (origin
(method url-fetch)
- (uri (string-append "https://github.com/maickrau/GraphAligner/files/"
- "14037134/GraphAligner.tar.gz"))
+ (uri "https://github.com/user-attachments/files/17976913/GraphAligner.tar.gz")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
- (base32 "1z1rxvl2pmiqbh670phkx7vma36w90ylp27wyadlbzf32pa2cpdn"))))
+ (base32 "1gs6jds4lazljb1s7s8f1vp0l4j8jvqy6qhb9sck7x66z8157ndm"))))
(build-system gnu-build-system)
(arguments
(list
@@ -1924,6 +1923,8 @@ The path-guided stochastic gradient descent based 1D sort implemented in
(string-append "-I" (search-input-directory inputs "/include/concurrentqueue")))
(("^JEMALLOCFLAGS.*")
"JEMALLOCFLAGS= `pkg-config --libs jemalloc`\n")
+ (("`pkg-config --cflags zlib`/bamtools")
+ (string-append "-I " (search-input-directory inputs "include/bamtools")))
;; No need to build statically.
(("-Wl,-Bstatic") "")
(("-static-libstdc\\+\\+") ""))))
@@ -1943,7 +1944,8 @@ The path-guided stochastic gradient descent based 1D sort implemented in
pkg-config
sparsehash))
(inputs
- (list boost
+ (list bamtools
+ boost
concurrentqueue
jemalloc
libdivsufsort