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-rw-r--r--gn/packages/bioinformatics.scm41
1 files changed, 0 insertions, 41 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index efb9470..13eda3a 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -807,47 +807,6 @@ integration with gPLINK and Haploview, there is some support for the
subsequent visualization, annotation and storage of results.")
(license license:gpl3+))))
-(define-public gemma-git ; guix candidate
- (let ((commit "2de4bfab3"))
- (package
- (name "gemma-git")
- (version (string-append "0.9.5-" commit ))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/genenetwork/GEMMA.git")
- (commit commit)))
- (file-name (string-append name "-" commit))
- (sha256
- (base32
- "1drffdgwbzgiw9sf55ghl3zjv58f8i9kfz0zys5mp6n06syp4ira"))))
- (inputs `(
- ("gsl" ,gsl)
- ("lapack" ,lapack)
- ("zlib" ,zlib)
- ))
- (build-system gnu-build-system)
- (arguments
- `(#:make-flags '(" FORCE_DYNAMIC=1")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-before 'build 'bin-mkdir
- (lambda _
- (mkdir-p "bin")
- ))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (install-file "bin/gemma" (string-append out "/bin"))))))
- #:tests? #f))
- (home-page "")
- (synopsis "Tool for genome-wide efficient mixed model association")
- (description "GEMMA is the software implementing the Genome-wide
-Efficient Mixed Model Association algorithm for a standard linear
-mixed model and some of its close relatives for genome-wide
-association studies (GWAS).")
- (license license:gpl3))))
(define-public vcflib ; duplicate? See above
(let ((commit "3ce827d8ebf89bb3bdc097ee0fe7f46f9f30d5fb"))