diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 4f133f8..a96abc2 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -11,6 +11,7 @@ #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system python) + #:use-module (guix build-system r) #:use-module (guix build-system trivial) #:use-module (guix build-system waf) #:use-module (gnu packages) @@ -1134,3 +1135,32 @@ here}.") (synopsis "Efficient sequence alignment of full genomes") (description "MUMmer is a versatil alignment tool for DNA and protein sequences.") (license license:artistic2.0))) + +(define-public r-qtl2 + (package + (name "r-qtl2") + (version "0.20") + (source (origin + (method git-fetch) + ;; Not yet available in cran. + (uri (git-reference + (url "https://github.com/rqtl/qtl2.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rsqlite" ,r-rsqlite) + ("r-yaml" ,r-yaml))) + (home-page "https://kbroman.org/qtl2/") + (synopsis + "QTL analysis software for high-dimensional data and complex cross designs") + (description + "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software +R/qtl, to better handle high-dimensional data and complex cross designs.") + (license license:gpl3))) |