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-rw-r--r--gn/packages/bioinformatics.scm39
1 files changed, 0 insertions, 39 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 056bc3f..0678444 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1141,45 +1141,6 @@ here}.")
(description "MUMmer is a versatil alignment tool for DNA and protein sequences.")
(license license:artistic2.0)))
-(define-public grocsvs
- (let ((commit "ecd956a65093a0b2c41849050e4512d46fecea5d")
- (revision "1"))
- (package
- (name "grocsvs")
- (version (git-version "0.2.6.1" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/grocsvs/grocsvs")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "14505725gr7qxc17cxxf0k6lzcwmgi64pija4mwf29aw70qn35cc"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2)) ; Only python-2 supported.
- (inputs
- `(("python2-admiral" ,python2-admiral)
- ("python2-h5py" ,python2-h5py)
- ("python2-ipython-cluster-helper" ,python2-ipython-cluster-helper)
- ("python2-networkx" ,python2-networkx)
- ("python2-psutil" ,python2-psutil)
- ("python2-pandas" ,python2-pandas)
- ("python2-pybedtools" ,python2-pybedtools)
- ("python2-pyfaidx" ,python2-pyfaidx)
- ("python2-pygraphviz" ,python2-pygraphviz)
- ("python2-pysam" ,python2-pysam)
- ("python2-scipy" ,python2-scipy)))
- (home-page "https://github.com/grocsvs/grocsvs")
- (synopsis "Genome-wide reconstruction of complex structural variants")
- (description
- "@dfn{Genome-wide Reconstruction of Complex Structural Variants}
-(GROC-SVs), is a software pipeline for identifying large-scale structural
-variants, performing sequence assembly at the breakpoints, and reconstructing
-the complex structural variants using the long-fragment information from the
-10x Genomics platform.")
- (license license:expat))))
-
(define-public diagnostic-slider
(let ((commit "514d65d4982133e4869e578c5553fced4c6d506c")
(revision "1"))