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-rw-r--r--gn/packages/bioinformatics.scm39
1 files changed, 39 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index f319532..27d9fb7 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -79,3 +79,42 @@
(synopsis #f)
(description #f)
(license #f)))
+
+(define-public r-wgcna
+(package
+ (name "r-wgcna")
+ (version "1.48")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "WGCNA" version))
+ (sha256
+ (base32
+ "18yl2v3s279saq318vd5hlwnqfm89rxmjjji778d2d26vviaf6bn"))))
+ (properties `((upstream-name . "WGCNA")))
+ (build-system r-build-system)
+ ;; (propagated-inputs
+ ;; `( ;; ("r-annotationdbi" ,r-annotationdbi)
+ ;; ("r-doparallel" ,r-doparallel)
+ ;; ("r-dynamictreecut" ,r-dynamictreecut)
+ ;; ("r-fastcluster" ,r-fastcluster)
+ ;; ("r-foreach" ,r-foreach)
+ ;; ("r-go.db" ,r-go.db)
+ ;; ("r-grdevices" ,r-grdevices)
+ ;; ("r-hmisc" ,r-hmisc)
+ ;; ("r-impute" ,r-impute)
+ ;; ("r-matrixstats" ,r-matrixstats)
+ ;; ("r-parallel" ,r-parallel)
+ ;; ("r-preprocesscore" ,r-preprocesscore)
+ ;; ("r-splines" ,r-splines)
+ ;; ("r-stats" ,r-stats)
+ ;; ("r-survival" ,r-survival)
+ ;; ("r-utils" ,r-utils)))
+ (home-page
+ "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
+ (synopsis
+ "Weighted Correlation Network Analysis")
+ (description
+ "Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.")
+ (license license:gpl2+)))
+