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Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 35fadc7..8bb4e80 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -545,6 +545,28 @@ can be found @url{https://www.biorxiv.org/content/10.1101/2020.11.11.378133v1, here}.") (license license:expat)))) +(define-public pbsim2 + (let ((commit "e71f7892aea0bd3c963b4f1f5628db4f830ee475") ; Dec 2, 2020 + (revision "1")) + (package + (name "pbsim2") + (version (git-version "0.0.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yukiteruono/pbsim2") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "13d3mhdp3rs58w14j9a5sbda4q8k9vzic7rgfa8223m7cm5ih6y7")))) + (build-system gnu-build-system) + (home-page "https://github.com/yukiteruono/pbsim2") + (synopsis "Simulator for long read sequencers") + (description "PBSIM simulates @acronym{Continuous Long Reads, CLRs} of +PacBio, and Nanopore reads. In it sampling-based and model-based simulations +are implemented.") + (license license:gpl2)))) + ;; TODO: Unbundle zlib, bamtools, tclap (define-public sniffles (package |