diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 21 |
1 files changed, 14 insertions, 7 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index d4c6e00..fc2c923 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1226,10 +1226,9 @@ runApp(launch.browser=0, port=4206)~%\n" "") (license #f))) -;; Note this package is incomplete. Needs more to run properly. (define-public bh20-seq-resource - (let ((commit "bbca5ac9b2538e410efe3e09651f87e5573145de") - (revision "2")) + (let ((commit "ae4cb3c2cf7103bbc84f52618bb755d7ce25775b") + (revision "3")) (package (name "bh20-seq-resource") (version (git-version "1.0" revision commit)) @@ -1240,22 +1239,30 @@ runApp(launch.browser=0, port=4206)~%\n" (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "1kkysjgmhp7kfb17470ik821p9djsidyqmkbjvv37jx2w9pvw31z")))) + (base32 "1k0gsz4yc8l5znanzd094g2jp40ksbpa9667zr31ayrjx6labz02")) + (modules '((guix build utils))) + (snippet + '(begin + (substitute* "setup.py" + (("py-dateutil") "python-dateutil")) + #t)))) (build-system python-build-system) - (inputs + (propagated-inputs `(("python-arvados-python-client" ,python-arvados-python-client) + ("python-dateutil" ,python-dateutil) ("python-flask" ,python-flask) ("python-magic" ,python-magic) ("python-pyyaml" ,python-pyyaml) ("python-pycurl" ,python-pycurl) ("python-pyshex" ,python-pyshex) + ("python-ruaml.yaml" ,python38-ruaml.yaml-0.15.76) ("clustalw" ,clustalw) ("python-schema-salad" ,python-schema-salad))) (native-inputs `(("git" ,(@ (gnu packages version-control) git)) ("python-oauth2client" ,python-oauth2client) - ("python-pytest" ,python-pytest) - ("python-pytest-runner" ,python-pytest-runner) + ("python-pytest" ,python-pytest-4) + ("python-pytest-runner" ,python-pytest-runner-2) ("python-uritemplate" ,python-uritemplate))) (home-page "https://github.com/arvados/bh20-seq-resource") (synopsis |