aboutsummaryrefslogtreecommitdiff
path: root/gn/packages/bioinformatics.scm
diff options
context:
space:
mode:
Diffstat (limited to 'gn/packages/bioinformatics.scm')
-rw-r--r--gn/packages/bioinformatics.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 4f133f8..a96abc2 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -11,6 +11,7 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
+ #:use-module (guix build-system r)
#:use-module (guix build-system trivial)
#:use-module (guix build-system waf)
#:use-module (gnu packages)
@@ -1134,3 +1135,32 @@ here}.")
(synopsis "Efficient sequence alignment of full genomes")
(description "MUMmer is a versatil alignment tool for DNA and protein sequences.")
(license license:artistic2.0)))
+
+(define-public r-qtl2
+ (package
+ (name "r-qtl2")
+ (version "0.20")
+ (source (origin
+ (method git-fetch)
+ ;; Not yet available in cran.
+ (uri (git-reference
+ (url "https://github.com/rqtl/qtl2.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://kbroman.org/qtl2/")
+ (synopsis
+ "QTL analysis software for high-dimensional data and complex cross designs")
+ (description
+ "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
+R/qtl, to better handle high-dimensional data and complex cross designs.")
+ (license license:gpl3)))