diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 39 |
1 files changed, 12 insertions, 27 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 09a706b..5a33929 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1232,8 +1232,8 @@ runApp(launch.browser=0, port=4206)~%\n" (license #f)))) (define-public bh20-seq-resource - (let ((commit "ddabd9390d2b221786ef58a6d85200eecf82ca2f") - (revision "1")) + (let ((commit "bbca5ac9b2538e410efe3e09651f87e5573145de") + (revision "2")) (package (name "bh20-seq-resource") (version (git-version "1.0" revision commit)) @@ -1244,11 +1244,12 @@ runApp(launch.browser=0, port=4206)~%\n" (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "04j8b7rz1vqczm6dlyvf1gx58idjhy0swmjbz4bm5r4zgpkps6mb")))) + (base32 "1kkysjgmhp7kfb17470ik821p9djsidyqmkbjvv37jx2w9pvw31z")))) (build-system python-build-system) (inputs `(("python-arvados-python-client" ,python-arvados-python-client) ("python-flask" ,python-flask) + ("python-magic" ,python-magic) ("python-pyyaml" ,python-pyyaml) ("python-schema-salad" ,python-schema-salad))) (native-inputs @@ -1269,25 +1270,17 @@ available to other researchers.") (define-public python-arvados-python-client (package (name "python-arvados-python-client") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (pypi-uri "arvados-python-client" version)) (sha256 (base32 - "1a363kdykj5jcrvh3q8wz06g6pqfnm2z48nfy64bls25pkiac1lr")))) + "19l4w6m5426x5k2kick630dh2jx26j16ycs2nhbfgr4cd43d29y4")))) (build-system python-build-system) (arguments - `(#:tests? #f ; tests not included? - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'loosen-version-requirements - (lambda _ - (substitute* "setup.py" - (("ruamel.yaml.*") "ruamel.yaml',\n") - (("pbr<1.7.0") "pbr")) - #t))))) + `(#:tests? #f)) ; tests not included? (propagated-inputs `(("python-ciso8601" ,python-ciso8601) ("python-future" ,python-future) @@ -1295,13 +1288,13 @@ available to other researchers.") ("python-google-api-client" ,python-google-api-client) ("python-httplib2" ,python-httplib2) ("python-pycurl" ,python-pycurl) - ("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-ruamel.yaml" ,python-ruamel.yaml-0.15) ("python-setuptools" ,python-setuptools) ("python-ws4py" ,python-ws4py))) (native-inputs `(("python-mock" ,python-mock) ("python-oauth2client" ,python-oauth2client) - ("python-pbr" ,python-pbr) + ("python-pbr" ,python-pbr-1.6.0) ("python-pyyaml" ,python-pyyaml) ("python-uritemplate" ,python-uritemplate))) (home-page "https://arvados.org") @@ -1315,25 +1308,17 @@ server.") (define-public python-schema-salad (package (name "python-schema-salad") - (version "5.0.20200302192450") + (version "5.0.20200416112825") (source (origin (method url-fetch) (uri (pypi-uri "schema-salad" version)) (sha256 (base32 - "14vqmfnnvpdaqpajwzi9gyjxx4y2mbgi3y5x3kwk2zqjnnadciv3")))) + "1pm6q266qrw4r0w0vnzhsvqgk5j8b3q61hxg99awhgpjsmcvkmsz")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'loosen-version-requirements - (lambda _ - (substitute* "setup.py" - (("CacheControl.*") "CacheControl',\n")) - #t))))) (propagated-inputs - `(("python-cachecontrol" ,python-cachecontrol) + `(("python-cachecontrol" ,python-cachecontrol-0.11) ("python-lockfile" ,python-lockfile) ("python-mistune" ,python-mistune) ("python-rdflib" ,python-rdflib) |