diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 48f1c40..b94f537 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1812,7 +1812,16 @@ suitable for long reads, but works also well with short reads.") (build-system python-build-system) (arguments (list - #:tests? #f)) ; Tests can't find pytest + #:tests? #f ; Tests can't find pytest + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch-program-calls + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "bh20sequploader/qc_fasta.py" + (("\"minimap2\"") + (string-append "\"" (search-input-file + inputs "/bin/minimap2") + "\"")))))))) (propagated-inputs (list python-arvados-python-client python-schema-salad @@ -1829,6 +1838,8 @@ suitable for long reads, but works also well with short reads.") ;; and for the service python gunicorn)) + (inputs + (list minimap2)) (native-inputs (list python-pytest-4 ; < 6 python-pytest-runner-4)) ; < 5 |