diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 1fb8844..89766bb 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2561,7 +2561,9 @@ multiple sequence alignment.") (wrap-script file `("PATH" ":" prefix ,(map (lambda (input) (string-append input "/bin")) - '#$(map (lambda (label) (this-package-input label)) + '#$(map (lambda (label) + (or (this-package-input (string-append label "-hwcaps")) + (this-package-input label))) (list "bcftools" "bedtools" "gfaffix" @@ -2569,7 +2571,7 @@ multiple sequence alignment.") "fastix" "multiqc" "mummer" - "odgi-hwcaps" + "odgi" "pafplot" "parallel" "pigz" @@ -2581,7 +2583,7 @@ multiple sequence alignment.") "vcfbub" "vcflib" "vg" - "wfmash-hwcaps")))))) + "wfmash")))))) (list (string-append out "/bin/pggb") (string-append out "/bin/partition-before-pggb") (string-append out "/bin/gfa2evaluation.sh") |