diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 25 |
1 files changed, 14 insertions, 11 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 405e5b3..2bdf47a 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -49,25 +49,28 @@ #:use-module (srfi srfi-1)) (define-public r-wgcna + (let ((commit "9c68667c3")) (package (name "r-wgcna") - (version "1.48") - (source - (origin - (method url-fetch) - (uri (cran-uri "WGCNA" version)) - (sha256 - (base32 - "18yl2v3s279saq318vd5hlwnqfm89rxmjjji778d2d26vviaf6bn")))) + (version (string-append "1.49-" commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/genenetwork/WGCNA.git") + (commit commit))) + (file-name (string-append name "-" commit)) + (sha256 + (base32 + "0cv824wkdml9h9imsc30s2x3l8g65j44cpjbr1ydkk49g5qmf581")))) (properties `((upstream-name . "WGCNA"))) (build-system r-build-system) (propagated-inputs `( ;; ("r-annotationdbi" ,r-annotationdbi) - ("r-biocparallel" ,r-biocparallel) + ; ("r-biocparallel" ,r-biocparallel) ; ("r-dynamictreecut" ,r-dynamictreecut) ; ("r-fastcluster" ,r-fastcluster) ; ("r-foreach" ,r-foreach) - ("r-go-db" ,r-go-db) + ; ("r-go-db" ,r-go-db) ; ("r-grdevices" ,r-grdevices) ; ("r-hmisc" ,r-hmisc) ("r-impute" ,r-impute) @@ -85,7 +88,7 @@ "Weighted Correlation Network Analysis") (description "Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.") - (license license:gpl2+))) + (license license:gpl2+)))) (define-public qtlreaper (package |