diff options
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 41 |
1 files changed, 0 insertions, 41 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index efb9470..13eda3a 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -807,47 +807,6 @@ integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.") (license license:gpl3+)))) -(define-public gemma-git ; guix candidate - (let ((commit "2de4bfab3")) - (package - (name "gemma-git") - (version (string-append "0.9.5-" commit )) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/genenetwork/GEMMA.git") - (commit commit))) - (file-name (string-append name "-" commit)) - (sha256 - (base32 - "1drffdgwbzgiw9sf55ghl3zjv58f8i9kfz0zys5mp6n06syp4ira")))) - (inputs `( - ("gsl" ,gsl) - ("lapack" ,lapack) - ("zlib" ,zlib) - )) - (build-system gnu-build-system) - (arguments - `(#:make-flags '(" FORCE_DYNAMIC=1") - #:phases - (modify-phases %standard-phases - (delete 'configure) - (add-before 'build 'bin-mkdir - (lambda _ - (mkdir-p "bin") - )) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (install-file "bin/gemma" (string-append out "/bin")))))) - #:tests? #f)) - (home-page "") - (synopsis "Tool for genome-wide efficient mixed model association") - (description "GEMMA is the software implementing the Genome-wide -Efficient Mixed Model Association algorithm for a standard linear -mixed model and some of its close relatives for genome-wide -association studies (GWAS).") - (license license:gpl3)))) (define-public vcflib ; duplicate? See above (let ((commit "3ce827d8ebf89bb3bdc097ee0fe7f46f9f30d5fb")) |